当前解析结果
SmilChr02G000261| 统一新 Gene ID | SmilChr02G000261 |
|---|---|
| 名称 | SmilChr02G000261 |
| 描述 | uncharacterized SmilChr02G000261 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 3366057 - 3369031 / + |
| NCBI Gene ID | LOC131012665 |
|---|---|
| GeneID | 131012665 |
| locus_tag | - |
| NCBI Name | LOC131012665 |
| 原始查询 | SmilChr02G000261 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=low |
| 产物 | TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G05270 (AT1G05270)TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027] identity=33.9; qcov=1.38; evalue=1.31e-28; confidence=low |
| Rice | Os05g0499500- identity=32.2; qcov=1.38; evalue=1.01e-26; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF01963 (TraB_PrgY_gumN) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012665 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057796636.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057796636.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057796636.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796636.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796636.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:3366096 |
TTC |
T |
2bp_deletion | frameshift_variant | 2 | B102,C74 |
Chr2:3366096 |
TTC |
T |
2bp_deletion | CDS_variant | 2 | B102,C74 |
Chr2:3366097 |
TC |
T |
1bp_deletion | frameshift_variant | 68 | A1,A10,A18,A21,A3,A5,A7,B100,B104,B106,B107,B11,B112,B113,B115,B117,B118,B123,B13,B130,B131,B133,B16,B17,B24,B25,B30,B36,B37,B4,B40,B46,B57,B6,B72,B76,B78,B81,B83,B84,B89,B95,C16,C18,C2,C22,C26,C27,C28,C32,C34,C39,C4,C44,C47,C5,C61,C69,C75,C77,C78,C8,C80,C82,C83,C84,C87,D3 |
Chr2:3366101 |
G |
GC |
1bp_insertion | frameshift_variant | 62 | A10,A18,A21,A3,A5,A7,B100,B104,B106,B107,B11,B112,B113,B115,B117,B123,B130,B133,B16,B24,B25,B30,B36,B37,B4,B40,B46,B57,B6,B62,B72,B76,B77,B78,B81,B83,B84,B85,B89,B95,C16,C18,C22,C27,C28,C32,C34,C39,C4,C44,C47,C59,C60,C61,C75,C77,C78,C8,C80,C82,C83,D3 |
Chr2:3366142 |
A |
AC |
1bp_insertion | frameshift_variant | 7 | B13,C2,C32,C48,C5,C68,C82 |
Chr2:3366146 |
G |
GT |
1bp_insertion | frameshift_variant | 52 | A1,A14,A22,B105,B118,B121,B124,B13,B131,B136,B138,B15,B17,B19,B22,B26,B29,B30,B44,B5,B51,B52,B54,B58,B60,B63,B67,B7,B82,B88,C1,C11,C12,C20,C25,C26,C3,C32,C35,C43,C48,C5,C51,C52,C54,C68,C69,C74,C79,C82,C84,C87 |
Chr2:3366573 |
T |
TAC |
2bp_insertion | frameshift_variant | 3 | B102,C18,C77 |
Chr2:3366573 |
T |
TAC |
2bp_insertion | CDS_variant | 3 | B102,C18,C77 |
Chr2:3366639 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B102,C22 |
Chr2:3366639 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,C22 |
Chr2:3366648 |
G |
GAA |
2bp_insertion | frameshift_variant | 1 | C13 |
Chr2:3366648 |
G |
GAA |
2bp_insertion | CDS_variant | 1 | C13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796636.1PF01963
TraB_PrgY_gumN 69-125 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796636.1 |
Pfam | PF01963 |
TraB_PrgY_gumN | Family | 69 | 125 | 9.8e-11 | 42.7 | TraB/PrgY/gumN family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。