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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000263

染色体: Chr02 坐标: 3411870-3414319 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000263
名称SmilChr02G000263
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向3411870 - 3414319 / +

ID 对照

NCBI Gene IDLOC131012663
GeneID131012663
locus_tag-
NCBI NameLOC131012663
原始查询SmilChr02G000263

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G12700 (RPF1)
RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825]
identity=34.4; qcov=0.784; evalue=6.92e-119; confidence=low
RiceOs10g0497300 (PPR794)
-
identity=31.2; qcov=0.891; evalue=2.53e-105; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012663

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057796634.1
2 Chloroplast 叶绿体 0.20000 XP_057796634.1
3 Nucleus 细胞核 0.00000 XP_057796634.1
4 Chromosome 染色体 0.00000 XP_057796634.1
5 Centromere 着丝粒 0.00000 XP_057796634.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:3412139 G A EMS_canonical_SNV CDS_variant 4 B13,C48,C68,C82
Chr2:3412198 C T EMS_canonical_SNV CDS_variant 2 B41,C74
Chr2:3412328 C T EMS_canonical_SNV CDS_variant 1 C6
Chr2:3412334 C T EMS_canonical_SNV CDS_variant 2 C6,C83
Chr2:3412443 C T EMS_canonical_SNV CDS_variant 5 B127,B132,C10,C6,C83
Chr2:3412446 C T EMS_canonical_SNV CDS_variant 1 D9
Chr2:3412454 C T EMS_canonical_SNV CDS_variant 1 D9
Chr2:3412883 C T EMS_canonical_SNV CDS_variant 2 B28,C35
Chr2:3412910 C T EMS_canonical_SNV CDS_variant 1 B67
Chr2:3413002 G A EMS_canonical_SNV CDS_variant 3 B54,C10,C83
Chr2:3413044 G A EMS_canonical_SNV CDS_variant 2 B107,C87
Chr2:3413047 G A EMS_canonical_SNV CDS_variant 2 B37,B79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796634.1
713 aa
N
1
356
713
PPR_2
PPR
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR
TPR_24
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
TPR_24
PPR_2
PPR
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 82-131 aa PF01535 PPR 89-115 aa PF01535 PPR 155-179 aa PF12854 PPR_1 186-213 aa PF13041 PPR_2 188-239 aa PF01535 PPR 191-217 aa PF12854 PPR_1 222-250 aa PF13041 PPR_2 225-274 aa PF01535 PPR 229-258 aa PF13812 PPR_3 250-288 aa PF12854 PPR_1 256-288 aa PF01535 PPR 263-289 aa PF12854 PPR_1 290-321 aa PF13812 PPR_3 292-339 aa PF13041 PPR_2 292-340 aa PF01535 PPR 295-323 aa PF12854 PPR_1 325-352 aa PF13041 PPR_2 327-376 aa PF01535 PPR 330-360 aa PF13812 PPR_3 350-408 aa PF12854 PPR_1 359-387 aa PF13041 PPR_2 362-409 aa PF01535 PPR 365-388 aa PF23276 TPR_24 383-493 aa PF13812 PPR_3 391-442 aa PF13041 PPR_2 397-445 aa PF01535 PPR 400-427 aa PF13812 PPR_3 420-477 aa PF12854 PPR_1 430-461 aa PF01535 PPR 436-464 aa PF23276 TPR_24 436-527 aa PF13041 PPR_2 440-481 aa PF13812 PPR_3 456-512 aa PF12854 PPR_1 465-494 aa PF13041 PPR_2 467-516 aa PF01535 PPR 470-500 aa PF13812 PPR_3 491-547 aa PF12854 PPR_1 498-529 aa PF13041 PPR_2 502-551 aa PF01535 PPR 505-535 aa PF13812 PPR_3 526-585 aa PF12854 PPR_1 533-564 aa PF13041 PPR_2 537-586 aa PF01535 PPR 540-570 aa PF12854 PPR_1 568-597 aa PF13041 PPR_2 572-620 aa PF01535 PPR 575-605 aa PF13812 PPR_3 599-650 aa PF12854 PPR_1 603-636 aa PF23276 TPR_24 603-689 aa PF13041 PPR_2 609-656 aa PF01535 PPR 610-640 aa PF12854 PPR_1 638-669 aa PF13041 PPR_2 642-686 aa PF01535 PPR 645-675 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796634.1 Pfam PF13041 PPR_2 Repeat 82 131 1.3e-203 659.9 PPR repeat family
XP_057796634.1 Pfam PF01535 PPR Repeat 89 115 7.8e-117 374.4 PPR repeat
XP_057796634.1 Pfam PF01535 PPR Repeat 155 179 7.8e-117 374.4 PPR repeat
XP_057796634.1 Pfam PF12854 PPR_1 Repeat 186 213 2.7e-161 523.6 PPR repeat
XP_057796634.1 Pfam PF13041 PPR_2 Repeat 188 239 1.3e-203 659.9 PPR repeat family
XP_057796634.1 Pfam PF01535 PPR Repeat 191 217 7.8e-117 374.4 PPR repeat
XP_057796634.1 Pfam PF12854 PPR_1 Repeat 222 250 2.7e-161 523.6 PPR repeat
XP_057796634.1 Pfam PF13041 PPR_2 Repeat 225 274 1.3e-203 659.9 PPR repeat family
XP_057796634.1 Pfam PF01535 PPR Repeat 229 258 7.8e-117 374.4 PPR repeat
XP_057796634.1 Pfam PF13812 PPR_3 Repeat 250 288 2.6e-76 252.4 Pentatricopeptide repeat domain
XP_057796634.1 Pfam PF12854 PPR_1 Repeat 256 288 2.7e-161 523.6 PPR repeat
XP_057796634.1 Pfam PF01535 PPR Repeat 263 289 7.8e-117 374.4 PPR repeat
XP_057796634.1 Pfam PF12854 PPR_1 Repeat 290 321 2.7e-161 523.6 PPR repeat
XP_057796634.1 Pfam PF13812 PPR_3 Repeat 292 339 2.6e-76 252.4 Pentatricopeptide repeat domain
XP_057796634.1 Pfam PF13041 PPR_2 Repeat 292 340 1.3e-203 659.9 PPR repeat family
XP_057796634.1 Pfam PF01535 PPR Repeat 295 323 7.8e-117 374.4 PPR repeat
XP_057796634.1 Pfam PF12854 PPR_1 Repeat 325 352 2.7e-161 523.6 PPR repeat
XP_057796634.1 Pfam PF13041 PPR_2 Repeat 327 376 1.3e-203 659.9 PPR repeat family
XP_057796634.1 Pfam PF01535 PPR Repeat 330 360 7.8e-117 374.4 PPR repeat
XP_057796634.1 Pfam PF13812 PPR_3 Repeat 350 408 2.6e-76 252.4 Pentatricopeptide repeat domain
XP_057796634.1 Pfam PF12854 PPR_1 Repeat 359 387 2.7e-161 523.6 PPR repeat
XP_057796634.1 Pfam PF13041 PPR_2 Repeat 362 409 1.3e-203 659.9 PPR repeat family
XP_057796634.1 Pfam PF01535 PPR Repeat 365 388 7.8e-117 374.4 PPR repeat
XP_057796634.1 Pfam PF23276 TPR_24 Repeat 383 493 1.9e-32 112.7 Pentatricopeptide repeat-containing protein
XP_057796634.1 Pfam PF13812 PPR_3 Repeat 391 442 2.6e-76 252.4 Pentatricopeptide repeat domain
XP_057796634.1 Pfam PF13041 PPR_2 Repeat 397 445 1.3e-203 659.9 PPR repeat family
XP_057796634.1 Pfam PF01535 PPR Repeat 400 427 7.8e-117 374.4 PPR repeat
XP_057796634.1 Pfam PF13812 PPR_3 Repeat 420 477 2.6e-76 252.4 Pentatricopeptide repeat domain
XP_057796634.1 Pfam PF12854 PPR_1 Repeat 430 461 2.7e-161 523.6 PPR repeat
XP_057796634.1 Pfam PF01535 PPR Repeat 436 464 7.8e-117 374.4 PPR repeat
XP_057796634.1 Pfam PF23276 TPR_24 Repeat 436 527 1.9e-32 112.7 Pentatricopeptide repeat-containing protein
XP_057796634.1 Pfam PF13041 PPR_2 Repeat 440 481 1.3e-203 659.9 PPR repeat family
XP_057796634.1 Pfam PF13812 PPR_3 Repeat 456 512 2.6e-76 252.4 Pentatricopeptide repeat domain
XP_057796634.1 Pfam PF12854 PPR_1 Repeat 465 494 2.7e-161 523.6 PPR repeat
XP_057796634.1 Pfam PF13041 PPR_2 Repeat 467 516 1.3e-203 659.9 PPR repeat family
XP_057796634.1 Pfam PF01535 PPR Repeat 470 500 7.8e-117 374.4 PPR repeat
XP_057796634.1 Pfam PF13812 PPR_3 Repeat 491 547 2.6e-76 252.4 Pentatricopeptide repeat domain
XP_057796634.1 Pfam PF12854 PPR_1 Repeat 498 529 2.7e-161 523.6 PPR repeat
XP_057796634.1 Pfam PF13041 PPR_2 Repeat 502 551 1.3e-203 659.9 PPR repeat family
XP_057796634.1 Pfam PF01535 PPR Repeat 505 535 7.8e-117 374.4 PPR repeat
XP_057796634.1 Pfam PF13812 PPR_3 Repeat 526 585 2.6e-76 252.4 Pentatricopeptide repeat domain
XP_057796634.1 Pfam PF12854 PPR_1 Repeat 533 564 2.7e-161 523.6 PPR repeat
XP_057796634.1 Pfam PF13041 PPR_2 Repeat 537 586 1.3e-203 659.9 PPR repeat family
XP_057796634.1 Pfam PF01535 PPR Repeat 540 570 7.8e-117 374.4 PPR repeat
XP_057796634.1 Pfam PF12854 PPR_1 Repeat 568 597 2.7e-161 523.6 PPR repeat
XP_057796634.1 Pfam PF13041 PPR_2 Repeat 572 620 1.3e-203 659.9 PPR repeat family
XP_057796634.1 Pfam PF01535 PPR Repeat 575 605 7.8e-117 374.4 PPR repeat
XP_057796634.1 Pfam PF13812 PPR_3 Repeat 599 650 2.6e-76 252.4 Pentatricopeptide repeat domain
XP_057796634.1 Pfam PF12854 PPR_1 Repeat 603 636 2.7e-161 523.6 PPR repeat
XP_057796634.1 Pfam PF23276 TPR_24 Repeat 603 689 1.9e-32 112.7 Pentatricopeptide repeat-containing protein
XP_057796634.1 Pfam PF13041 PPR_2 Repeat 609 656 1.3e-203 659.9 PPR repeat family
XP_057796634.1 Pfam PF01535 PPR Repeat 610 640 7.8e-117 374.4 PPR repeat
XP_057796634.1 Pfam PF12854 PPR_1 Repeat 638 669 2.7e-161 523.6 PPR repeat
XP_057796634.1 Pfam PF13041 PPR_2 Repeat 642 686 1.3e-203 659.9 PPR repeat family
XP_057796634.1 Pfam PF01535 PPR Repeat 645 675 7.8e-117 374.4 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940651.1
ATGCTTTTGCTTTTCAGCGACTCCTCAAACGCGATTACTCCATCAACGGCTGAGATTTGATCAACAACATCCAACGGCTCACCATGAATCGAAAAGCCCAGATCTACTTTGCCTTTCTTCCCCAGCTAGCACTGCGAATTCCCCCAAACTCGTTTTTCAGTCTTCTTCTCACAAAACCCTATCTCTCCATCTTCAACAGCGACCTTCCCCAATTCTTCAGCTTCCAATTTCAGCGGTCACAGCTACAAAACCATCCCAAG...

CDS

1 records

下载 CDS FASTA
LOC131012663
ATGAGGTCGAACTCCGCCGCCATGTTTCTGGGTAGAATTTTGTCGATTTCTTCATCTAAATTCTCCACCTTTGCCATCGCTTCTCCACATTATCAATCATTTCTTGTACCCAGTTTTAATTTTGATAATGCCAGCTGCCAAATCAGACAATTCTCCGCCTATCCCAGATCCGATTTTGGATCTCTGCGTGAGCCCAACGATGCCGTCGATCTATTTTGGGAGATGATGAGAACGGAGCCGCTTCCTTCTGTTAAGCTTTT...

Protein

1 records

下载 Protein FASTA
XP_057796634.1
MRSNSAAMFLGRILSISSSKFSTFAIASPHYQSFLVPSFNFDNASCQIRQFSAYPRSDFGSLREPNDAVDLFWEMMRTEPLPSVKLFSKLLSVVVKMKQYSLALHLFDEMLQRDIPINHFTLTIAIDGCCRLKRPDFGFAIVGIFFKRGYEPTVVTFTILIKGLLLVGRIPEAAKVLGKLSAYQLCEPDEYMYNTIINGLCKAGDILQAIELLCSLEKGKGNCKPDVYAYNIVIDGLCKEGKVDEGLHLLSTLGDKGISP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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