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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000266

染色体: Chr02 坐标: 3437886-3447368 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000266
名称SmilChr02G000266
描述pentatricopeptide repeat-containing protein At1g63330-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向3437886 - 3447368 / +

ID 对照

NCBI Gene IDLOC131012669
GeneID131012669
locus_tag-
NCBI NameLOC131012669
原始查询SmilChr02G000266

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g63330-like
产物pentatricopeptide repeat-containing protein At1g63330-like
ArabidopsisAT1G12700 (RPF1)
RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825]
identity=35.5; qcov=0.761; evalue=6.01e-122; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=32.4; qcov=0.966; evalue=1.13e-120; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012669

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057796641.1
2 Chloroplast 叶绿体 0.40000 XP_057796641.1
3 Nucleus 细胞核 0.00000 XP_057796641.1
4 Chromosome 染色体 0.00000 XP_057796641.1
5 Centromere 着丝粒 0.00000 XP_057796641.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:3438224 G A EMS_canonical_SNV CDS_variant 3 B108,B86,C35
Chr2:3438296 G A EMS_canonical_SNV CDS_variant 5 B108,B43,B86,C35,C63
Chr2:3438465 C T EMS_canonical_SNV CDS_variant 1 A18
Chr2:3438661 C T EMS_canonical_SNV CDS_variant 2 A18,B65
Chr2:3438698 TC T 1bp_deletion frameshift_variant 1 B23
Chr2:3438698 TC T 1bp_deletion CDS_variant 1 B23
Chr2:3438708 G A EMS_canonical_SNV CDS_variant 2 A18,B65
Chr2:3438718 G A EMS_canonical_SNV CDS_variant 2 A18,B65
Chr2:3438776 A AAG 2bp_insertion frameshift_variant 7 B13,B133,B22,B30,C64,C75,C84
Chr2:3438802 TA T 1bp_deletion frameshift_variant 4 B13,B133,B136,C64
Chr2:3438802 TA T 1bp_deletion CDS_variant 4 B13,B133,B136,C64
Chr2:3438932 AT A 1bp_deletion frameshift_variant 1 C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796641.1
729 aa
N
1
364
729
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
TPR_24
PPR_2
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
C
PF13812 PPR_3 62-104 aa PF13041 PPR_2 75-122 aa PF01535 PPR 77-105 aa PF13812 PPR_3 139-189 aa PF12854 PPR_1 140-170 aa PF13041 PPR_2 143-193 aa PF01535 PPR 146-170 aa PF12854 PPR_1 177-204 aa PF23276 TPR_24 178-279 aa PF13041 PPR_2 179-230 aa PF01535 PPR 182-207 aa PF12854 PPR_1 214-242 aa PF13812 PPR_3 215-261 aa PF13041 PPR_2 216-265 aa PF01535 PPR 219-249 aa PF13812 PPR_3 241-279 aa PF12854 PPR_1 247-279 aa PF01535 PPR 254-280 aa PF12854 PPR_1 281-312 aa PF13812 PPR_3 283-330 aa PF13041 PPR_2 283-331 aa PF01535 PPR 286-314 aa PF13812 PPR_3 315-367 aa PF12854 PPR_1 316-343 aa PF13041 PPR_2 318-367 aa PF01535 PPR 321-351 aa PF12854 PPR_1 350-378 aa PF13041 PPR_2 353-400 aa PF01535 PPR 356-379 aa PF13812 PPR_3 384-433 aa PF12854 PPR_1 385-417 aa PF13041 PPR_2 388-436 aa PF01535 PPR 391-418 aa PF12854 PPR_1 421-452 aa PF01535 PPR 427-456 aa PF23276 TPR_24 428-519 aa PF13812 PPR_3 447-503 aa PF12854 PPR_1 454-485 aa PF13041 PPR_2 458-507 aa PF01535 PPR 461-491 aa PF12854 PPR_1 489-520 aa PF13041 PPR_2 493-542 aa PF01535 PPR 496-525 aa PF13812 PPR_3 517-576 aa PF12854 PPR_1 524-555 aa PF13041 PPR_2 528-577 aa PF01535 PPR 531-561 aa PF12854 PPR_1 559-590 aa PF13041 PPR_2 563-611 aa PF01535 PPR 566-596 aa PF12854 PPR_1 594-625 aa PF01535 PPR 601-631 aa PF13041 PPR_2 605-647 aa PF13812 PPR_3 622-676 aa PF12854 PPR_1 629-662 aa PF13041 PPR_2 633-682 aa PF01535 PPR 636-666 aa PF13041 PPR_2 668-713 aa PF01535 PPR 671-701 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796641.1 Pfam PF13812 PPR_3 Repeat 62 104 2.2e-90 297.4 Pentatricopeptide repeat domain
XP_057796641.1 Pfam PF13041 PPR_2 Repeat 75 122 8.9e-232 750.0 PPR repeat family
XP_057796641.1 Pfam PF01535 PPR Repeat 77 105 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF13812 PPR_3 Repeat 139 189 2.2e-90 297.4 Pentatricopeptide repeat domain
XP_057796641.1 Pfam PF12854 PPR_1 Repeat 140 170 5.4e-190 615.4 PPR repeat
XP_057796641.1 Pfam PF13041 PPR_2 Repeat 143 193 8.9e-232 750.0 PPR repeat family
XP_057796641.1 Pfam PF01535 PPR Repeat 146 170 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF12854 PPR_1 Repeat 177 204 5.4e-190 615.4 PPR repeat
XP_057796641.1 Pfam PF23276 TPR_24 Repeat 178 279 1.2e-39 136.0 Pentatricopeptide repeat-containing protein
XP_057796641.1 Pfam PF13041 PPR_2 Repeat 179 230 8.9e-232 750.0 PPR repeat family
XP_057796641.1 Pfam PF01535 PPR Repeat 182 207 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF12854 PPR_1 Repeat 214 242 5.4e-190 615.4 PPR repeat
XP_057796641.1 Pfam PF13812 PPR_3 Repeat 215 261 2.2e-90 297.4 Pentatricopeptide repeat domain
XP_057796641.1 Pfam PF13041 PPR_2 Repeat 216 265 8.9e-232 750.0 PPR repeat family
XP_057796641.1 Pfam PF01535 PPR Repeat 219 249 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF13812 PPR_3 Repeat 241 279 2.2e-90 297.4 Pentatricopeptide repeat domain
XP_057796641.1 Pfam PF12854 PPR_1 Repeat 247 279 5.4e-190 615.4 PPR repeat
XP_057796641.1 Pfam PF01535 PPR Repeat 254 280 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF12854 PPR_1 Repeat 281 312 5.4e-190 615.4 PPR repeat
XP_057796641.1 Pfam PF13812 PPR_3 Repeat 283 330 2.2e-90 297.4 Pentatricopeptide repeat domain
XP_057796641.1 Pfam PF13041 PPR_2 Repeat 283 331 8.9e-232 750.0 PPR repeat family
XP_057796641.1 Pfam PF01535 PPR Repeat 286 314 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF13812 PPR_3 Repeat 315 367 2.2e-90 297.4 Pentatricopeptide repeat domain
XP_057796641.1 Pfam PF12854 PPR_1 Repeat 316 343 5.4e-190 615.4 PPR repeat
XP_057796641.1 Pfam PF13041 PPR_2 Repeat 318 367 8.9e-232 750.0 PPR repeat family
XP_057796641.1 Pfam PF01535 PPR Repeat 321 351 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF12854 PPR_1 Repeat 350 378 5.4e-190 615.4 PPR repeat
XP_057796641.1 Pfam PF13041 PPR_2 Repeat 353 400 8.9e-232 750.0 PPR repeat family
XP_057796641.1 Pfam PF01535 PPR Repeat 356 379 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF13812 PPR_3 Repeat 384 433 2.2e-90 297.4 Pentatricopeptide repeat domain
XP_057796641.1 Pfam PF12854 PPR_1 Repeat 385 417 5.4e-190 615.4 PPR repeat
XP_057796641.1 Pfam PF13041 PPR_2 Repeat 388 436 8.9e-232 750.0 PPR repeat family
XP_057796641.1 Pfam PF01535 PPR Repeat 391 418 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF12854 PPR_1 Repeat 421 452 5.4e-190 615.4 PPR repeat
XP_057796641.1 Pfam PF01535 PPR Repeat 427 456 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF23276 TPR_24 Repeat 428 519 1.2e-39 136.0 Pentatricopeptide repeat-containing protein
XP_057796641.1 Pfam PF13812 PPR_3 Repeat 447 503 2.2e-90 297.4 Pentatricopeptide repeat domain
XP_057796641.1 Pfam PF12854 PPR_1 Repeat 454 485 5.4e-190 615.4 PPR repeat
XP_057796641.1 Pfam PF13041 PPR_2 Repeat 458 507 8.9e-232 750.0 PPR repeat family
XP_057796641.1 Pfam PF01535 PPR Repeat 461 491 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF12854 PPR_1 Repeat 489 520 5.4e-190 615.4 PPR repeat
XP_057796641.1 Pfam PF13041 PPR_2 Repeat 493 542 8.9e-232 750.0 PPR repeat family
XP_057796641.1 Pfam PF01535 PPR Repeat 496 525 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF13812 PPR_3 Repeat 517 576 2.2e-90 297.4 Pentatricopeptide repeat domain
XP_057796641.1 Pfam PF12854 PPR_1 Repeat 524 555 5.4e-190 615.4 PPR repeat
XP_057796641.1 Pfam PF13041 PPR_2 Repeat 528 577 8.9e-232 750.0 PPR repeat family
XP_057796641.1 Pfam PF01535 PPR Repeat 531 561 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF12854 PPR_1 Repeat 559 590 5.4e-190 615.4 PPR repeat
XP_057796641.1 Pfam PF13041 PPR_2 Repeat 563 611 8.9e-232 750.0 PPR repeat family
XP_057796641.1 Pfam PF01535 PPR Repeat 566 596 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF12854 PPR_1 Repeat 594 625 5.4e-190 615.4 PPR repeat
XP_057796641.1 Pfam PF01535 PPR Repeat 601 631 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF13041 PPR_2 Repeat 605 647 8.9e-232 750.0 PPR repeat family
XP_057796641.1 Pfam PF13812 PPR_3 Repeat 622 676 2.2e-90 297.4 Pentatricopeptide repeat domain
XP_057796641.1 Pfam PF12854 PPR_1 Repeat 629 662 5.4e-190 615.4 PPR repeat
XP_057796641.1 Pfam PF13041 PPR_2 Repeat 633 682 8.9e-232 750.0 PPR repeat family
XP_057796641.1 Pfam PF01535 PPR Repeat 636 666 1.1e-132 424.2 PPR repeat
XP_057796641.1 Pfam PF13041 PPR_2 Repeat 668 713 8.9e-232 750.0 PPR repeat family
XP_057796641.1 Pfam PF01535 PPR Repeat 671 701 1.1e-132 424.2 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940658.1
TGCACTTATCTTATCATCATACACCTTTTTCAATCATCTCTTCGAAACCTTCTGCAAAATTATCACATAAAAAGAAAAATAGAGTGAGAATGTGGCGGAATCATGCTGCCATGATTTTGGGAAGAATTATCTCCAATTCTTCATTCAATTCATCCACTCTCCCTGTCAAACCCAGATTCAATTTTGATAATCTCAGCCACCAAATTAAATACTTCTCCGCCTATCCCAGATTCGATTTTGGATCTATACGTGAGCCCAAT...

CDS

1 records

下载 CDS FASTA
LOC131012669
ATGTGGCGGAATCATGCTGCCATGATTTTGGGAAGAATTATCTCCAATTCTTCATTCAATTCATCCACTCTCCCTGTCAAACCCAGATTCAATTTTGATAATCTCAGCCACCAAATTAAATACTTCTCCGCCTATCCCAGATTCGATTTTGGATCTATACGTGAGCCCAATGATGCCGTCGCTCTATTTCGGGAGATGGTGAGGACTCAACCACGCCCATATGTTACTGTTTTCAATAAATTGTTGAGTGTTGTGGTGAA...

Protein

1 records

下载 Protein FASTA
XP_057796641.1
MWRNHAAMILGRIISNSSFNSSTLPVKPRFNFDNLSHQIKYFSAYPRFDFGSIREPNDAVALFREMVRTQPRPYVTVFNKLLSVVVKMKQYSLALHLFDEMLKRNAPVNHYTLNIAIDGCCRLKRPDFGLAILGLFFKHGYEPDVVTFTILIKGLLLVGRISEAAKVLGKLSAYHLCEPNEYTYNTIINGLCKAGDILQAFELLCSLENGKGSCKPDVYTYSIVIDGLCKEGKVDEALQLFSTLGDKGISPDIVTYNSII...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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