当前解析结果
SmilChr02G000278| 统一新 Gene ID | SmilChr02G000278 |
|---|---|
| 名称 | SmilChr02G000278 |
| 描述 | replication protein A 70 kDa DNA-binding subunit B-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 3555896 - 3557771 / - |
| NCBI Gene ID | LOC131007849 |
|---|---|
| GeneID | 131007849 |
| locus_tag | - |
| NCBI Name | LOC131007849 |
| 原始查询 | SmilChr02G000278 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | replication protein A 70 kDa DNA-binding subunit B-like |
| 产物 | replication protein A 70 kDa DNA-binding subunit B-like |
| Arabidopsis | AT5G08020 (RPA70B)RPA70-kDa subunit B [Source:NCBI gene (formerly Entrezgene);Acc:830696] identity=19.7; qcov=0.734; evalue=2.77e-08; confidence=weak |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007849 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790745.1 |
| 2 | Chromosome | 染色体 | 1.00000 | XP_057790745.1 |
| 3 | Telomere | 端粒 | 1.00000 | XP_057790745.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790745.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790745.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:3555924 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,C39 |
Chr2:3555925 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,C39 |
Chr2:3555949 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,B89 |
Chr2:3555970 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B52,B64,C37,C54 |
Chr2:3555984 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B52,B64,C37,C54 |
Chr2:3556144 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B52,B64,C37,C54 |
Chr2:3556237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B134,B40,C58,D2 |
Chr2:3556330 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B131,B67,D8 |
Chr2:3556330 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B67,D8 |
Chr2:3556385 |
CA |
C |
1bp_deletion | frameshift_variant | 24 | A10,B105,B107,B131,B20,B33,B36,B40,B41,B47,B52,B54,B72,B74,B83,C18,C26,C3,C30,C42,C54,C56,C78,C84 |
Chr2:3556399 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr2:3556402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。