Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000281`

染色体: Chr02 坐标: 3587184-3595377 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000281`
名称	SmilChr02G000281
描述	syntaxin-132-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	3587184 - 3595377 / `-`

ID 对照

NCBI Gene ID	`LOC131012680`
GeneID	`131012680`
locus_tag	`-`
NCBI Name	`LOC131012680`
原始查询	`SmilChr02G000281`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	syntaxin-132-like
产物	syntaxin-132-like
Arabidopsis	`AT3G03800` (SYP131) syntaxin of plants 131 [Source:NCBI gene (formerly Entrezgene);Acc:821141] identity=60.2; qcov=0.993; evalue=4.17e-120; confidence=high
Rice	`Os07g0164300` (P0428D12.123) - identity=60.1; qcov=1; evalue=3.39e-122; confidence=high
GO	GO:0000149 (SNARE binding); GO:0005484 (SNAP receptor activity); GO:0005886 (plasma membrane); GO:0006886 (intracellular protein transport); GO:0006887 (exocytosis); GO:0006906 (vesicle fusion); GO:0012505 (endomembrane system); GO:0031201 (SNARE complex); GO:0048278 (GO:0048278)
KEGG	smil04130 (SNARE interactions in vesicular transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF00804 (Syntaxin); PF05739 (SNARE)
InterPro	-
eggNOG	-
NR	GeneID:131012680

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057796654.1`
2	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057796654.1`
3	Secretory vesicle	Secretory vesicle	0.20000	`XP_057796654.1`
4	Cell projection	细胞突起	0.20000	`XP_057796654.1`
5	Axon	Axon	0.20000	`XP_057796654.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:3587457`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,B91,C48
`Chr2:3588938`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B102,B137,B44,C61
`Chr2:3588975`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr2:3589809`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B37,B6,C51
`Chr2:3590638`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:3590648`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B122,B32,C47,D11,D3
`Chr2:3591086`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B30,C61
`Chr2:3591205`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr2:3591848`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B137,B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796654.1

306 aa

153

306

Syntaxin

SNARE

PF00804 Syntaxin 37-197 aa PF05739 SNARE 210-287 aa

XP_057796655.1

306 aa

153

306

Syntaxin

SNARE

PF00804 Syntaxin 37-197 aa PF05739 SNARE 210-287 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796654.1`	Pfam	`PF00804`	Syntaxin	Domain	37	197	7.9e-50	169.4	Syntaxin
`XP_057796654.1`	Pfam	`PF05739`	SNARE	Domain	210	287	3e-25	88.6	SNARE domain
`XP_057796655.1`	Pfam	`PF00804`	Syntaxin	Domain	37	197	7.9e-50	169.4	Syntaxin
`XP_057796655.1`	Pfam	`PF05739`	SNARE	Domain	210	287	1e-23	83.7	SNARE domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940672.1
AGTGGATATATTAGATTAGTCGTTAATTAAATTGGTTCCAAAATTCCAACTTTGTTTTTGACTAAAAACATTAATTTACTGTTGATTGTTGAACGTAACGCCTATGCTTCCAACTTTGATCGCTTTAATTTCATCATCGTGCAGCAAATTGAAGAATCAAACAAAAACTGCAAAAAATTCCCCTCTTTTTTTTTCTCTCTTTTCTCGTCTCACAGTTGTCGCCGGCCGAATATTACCCACAATAAATTCCAACAAACAGT...

XM_057940671.1
AGTCGTTAATTAAATTGGTTCCAAAATTCCAACTTTGTTTTTGACTAAAAACATTAATTTACTGTTGATTGTTGAACGTAACGCCTATGCTTCCAACTTTGATCGCTTTAATTTCATCATCGTGCAGCAAATTGAAGAATCAAACAAAAACTGCAAAAAATTCCCCTCTTTTTTTTTCTCTCTTTTCTCGTCTCACAGTTGTCGCCGGCCGAATATTACCCACAATAAATTCCAACAAACAGTTTTTGAAAAATCCCACA...

CDS

2 records

下载 CDS FASTA

LOC131012680
ATGAACGATCTTCTCACGGATTCCTTCGTCGGAGATGCCAAAGGCAACACGTCGAGAGAGGCCGATATAGAGATGGGCCGCCCCCGACTTCCCCGGAGTAGCTCGGATGCGGCTTTGGAGTCCTTCAATAAGCAGATACAAGAGGTCGAGGCGCAGGTGGAGAAACTCTCTGTTTTGCTACAGAAACTTAAGGAAGCCAACGAGGAGTCAAAATCGGTTACAAAAGCATCTTCAATGAAAGCTATCAGGAAACGGATGGA...

Protein

2 records

下载 Protein FASTA

XP_057796654.1
MNDLLTDSFVGDAKGNTSREADIEMGRPRLPRSSSDAALESFNKQIQEVEAQVEKLSVLLQKLKEANEESKSVTKASSMKAIRKRMEKDIDEVGKIARNIKLKIEATNKDNLANRQKPGCGKGTAVDRSRTNMTNALTKKFKDLMTEFQTLRQRIEEEYREVVERRVITVTGTRPDEETINHLIETGNSEQIFQQAMQESGRGQVMNTLEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVEAQGDILDNIESQVTNAVDH...

XP_057796655.1
MNDLLTDSFVGDAKGNTSREADIEMGRPRLPRSSSDAALESFNKQIQEVEAQVEKLSVLLQKLKEANEESKSVTKASSMKAIRKRMEKDIDEVGKIARNIKLKIEATNKDNLANRQKPGCGKGTAVDRSRTNMTNALTKKFKDLMTEFQTLRQRIEEEYREVVERRVITVTGTRPDEETINHLIETGNSEQIFQQAMQESGRGQVMNTLEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVEAQGDILDNIESQVKNAVDH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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