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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000285

染色体: Chr02 坐标: 3641492-3646573 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000285
名称SmilChr02G000285
描述glutamate receptor 3.4-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向3641492 - 3646573 / -

ID 对照

NCBI Gene IDLOC131012683
GeneID131012683
locus_tag-
NCBI NameLOC131012683
原始查询SmilChr02G000285

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述glutamate receptor 3.4-like
产物glutamate receptor 3.4-like
ArabidopsisAT1G05200 (GLR3.4)
glutamate receptor 3.4 [Source:NCBI gene (formerly Entrezgene);Acc:839268]
identity=65.2; qcov=0.981; evalue=0; confidence=high
RiceOs07g0522600 (OsGLR3.7)
-
identity=59.5; qcov=0.988; evalue=0; confidence=high
GOGO:0004930 (G protein-coupled receptor activity); GO:0004970 (glutamate-gated receptor activity); GO:0005886 (plasma membrane); GO:0007186 (G protein-coupled receptor signaling pathway)
KEGG-
PfamPF00060 (Lig_chan); PF00497 (SBP_bac_3); PF01094 (ANF_receptor); PF10613 (Lig_chan-Glu_bd); PF13458 (Peripla_BP_6)
InterPro-
eggNOG-
NRGeneID:131012683

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057796658.1
2 Nucleus 细胞核 0.00000 XP_057796658.1
3 Chromosome 染色体 0.00000 XP_057796658.1
4 Centromere 着丝粒 0.00000 XP_057796658.1
5 Chromatin 染色质 0.00000 XP_057796658.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:3641924 G A EMS_canonical_SNV CDS_variant 4 A5,B12,B30,B31
Chr2:3641993 G A EMS_canonical_SNV CDS_variant 1 B104
Chr2:3642119 C T EMS_canonical_SNV CDS_variant 1 B32
Chr2:3642120 G A EMS_canonical_SNV CDS_variant 2 B28,C15
Chr2:3642158 G A EMS_canonical_SNV CDS_variant 1 B104
Chr2:3642185 G A EMS_canonical_SNV CDS_variant 1 B28
Chr2:3642242 C T EMS_canonical_SNV CDS_variant 1 B45
Chr2:3642624 G A EMS_canonical_SNV CDS_variant 5 A19,B104,B106,B20,B47
Chr2:3642741 G A EMS_canonical_SNV CDS_variant 1 D10
Chr2:3642753 G A EMS_canonical_SNV CDS_variant 4 A5,B12,B30,B31
Chr2:3642885 C T EMS_canonical_SNV CDS_variant 5 A19,B104,B106,B20,B47
Chr2:3643281 G A EMS_canonical_SNV CDS_variant 5 A19,B104,B106,B20,B47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796658.1
924 aa
N
1
462
924
Peripla_BP_6
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Lig_chan
C
PF13458 Peripla_BP_6 44-332 aa PF01094 ANF_receptor 51-406 aa PF10613 Lig_chan-Glu_bd 471-570 aa PF00497 SBP_bac_3 523-808 aa PF00060 Lig_chan 585-840 aa
XP_057796659.1
924 aa
N
1
462
924
Peripla_BP_6
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Lig_chan
C
PF13458 Peripla_BP_6 44-332 aa PF01094 ANF_receptor 51-406 aa PF10613 Lig_chan-Glu_bd 471-570 aa PF00497 SBP_bac_3 523-808 aa PF00060 Lig_chan 585-840 aa
XP_057796660.1
830 aa
N
1
415
830
ANF_receptor
Peripla_BP_6
Lig_chan-Glu_bd
SBP_bac_3
Lig_chan
C
PF01094 ANF_receptor 2-312 aa PF13458 Peripla_BP_6 3-238 aa PF10613 Lig_chan-Glu_bd 377-476 aa PF00497 SBP_bac_3 429-714 aa PF00060 Lig_chan 491-746 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796658.1 Pfam PF13458 Peripla_BP_6 Family 44 332 9.8e-15 55.7 Periplasmic binding protein
XP_057796658.1 Pfam PF01094 ANF_receptor Domain 51 406 9e-84 282.2 Receptor family ligand binding region
XP_057796658.1 Pfam PF10613 Lig_chan-Glu_bd Domain 471 570 9.4e-12 45.8 Ligated ion channel L-glutamate- and glycine-binding site
XP_057796658.1 Pfam PF00497 SBP_bac_3 Domain 523 808 3.3e-11 43.8 Bacterial extracellular solute-binding proteins, family 3
XP_057796658.1 Pfam PF00060 Lig_chan Family 585 840 3.1e-38 131.6 Ligand-gated ion channel
XP_057796659.1 Pfam PF13458 Peripla_BP_6 Family 44 332 9.8e-15 55.7 Periplasmic binding protein
XP_057796659.1 Pfam PF01094 ANF_receptor Domain 51 406 9e-84 282.2 Receptor family ligand binding region
XP_057796659.1 Pfam PF10613 Lig_chan-Glu_bd Domain 471 570 9.4e-12 45.8 Ligated ion channel L-glutamate- and glycine-binding site
XP_057796659.1 Pfam PF00497 SBP_bac_3 Domain 523 808 3.3e-11 43.8 Bacterial extracellular solute-binding proteins, family 3
XP_057796659.1 Pfam PF00060 Lig_chan Family 585 840 3.1e-38 131.6 Ligand-gated ion channel
XP_057796660.1 Pfam PF01094 ANF_receptor Domain 2 312 8.7e-72 242.8 Receptor family ligand binding region
XP_057796660.1 Pfam PF13458 Peripla_BP_6 Family 3 238 4.4e-09 37.2 Periplasmic binding protein
XP_057796660.1 Pfam PF10613 Lig_chan-Glu_bd Domain 377 476 8.2e-12 46.0 Ligated ion channel L-glutamate- and glycine-binding site
XP_057796660.1 Pfam PF00497 SBP_bac_3 Domain 429 714 2.8e-11 44.0 Bacterial extracellular solute-binding proteins, family 3
XP_057796660.1 Pfam PF00060 Lig_chan Family 491 746 2.6e-38 131.8 Ligand-gated ion channel

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057940676.1
AAAAATCTAGGAATCGAATTTTTGTTATATATTATTGACATGGACAGTTAAAAATCAAGCAGAAGAAATCGAACTTAGATATTATAGTTGTGAATTTTTGCTAACTACCCACATATCAGCCGTTAACTATTTGAGCTTGTGAGTTCTTGAATTCTGCTGGGAGAAATGGAGGGCCGTGCAGCGGCGAGGCGGGCTTCGTTGCTCTTGATTCTGTGTGTGTTTGCTGGTGTGGGAGTGGCTGCCCAGAATGGGAATTCTAG...
XM_057940675.1
TTTCATTATTATAATATATTATATTTGTCTCTTTCTATTCATTTATTTAGTTTATCCATGTGAGCCAGCAGCAAAAGAAAAAGATTGCAGATTTCTTCTTCAGCTCAAAAAATGGAGCTTTTGATGATTAATTAATCATTTTCATTTTATTTGAGCTTGTGAGTTCTTGAATTCTGCTGGGAGAAATGGAGGGCCGTGCAGCGGCGAGGCGGGCTTCGTTGCTCTTGATTCTGTGTGTGTTTGCTGGTGTGGGAGTGGCT...

CDS

3 records

下载 CDS FASTA
LOC131012683
ATGGAGGGCCGTGCAGCGGCGAGGCGGGCTTCGTTGCTCTTGATTCTGTGTGTGTTTGCTGGTGTGGGAGTGGCTGCCCAGAATGGGAATTCTAGTGTGGTGAATGTTGGGGCTTTGTTCACTTTCAATTCTTATATTGGGAGGTCTTTGGGGCCAGCAATTTCTGCTGCAGTTGAAGATGTGAATTCTGACACCACCATTTTGAAGGACAAGAAAATCAATCCTATTTTTCAGGATACTAATTGCAGTGGATTTGTTGG...
LOC131012683
ATGGAGGGCCGTGCAGCGGCGAGGCGGGCTTCGTTGCTCTTGATTCTGTGTGTGTTTGCTGGTGTGGGAGTGGCTGCCCAGAATGGGAATTCTAGTGTGGTGAATGTTGGGGCTTTGTTCACTTTCAATTCTTATATTGGGAGGTCTTTGGGGCCAGCAATTTCTGCTGCAGTTGAAGATGTGAATTCTGACACCACCATTTTGAAGGACAAGAAAATCAATCCTATTTTTCAGGATACTAATTGCAGTGGATTTGTTGG...

Protein

3 records

下载 Protein FASTA
XP_057796658.1
MEGRAAARRASLLLILCVFAGVGVAAQNGNSSVVNVGALFTFNSYIGRSLGPAISAAVEDVNSDTTILKDKKINPIFQDTNCSGFVGTIEAMQIMSKQVVAALGPQSSGIAHVISHVTNELHIPLISFATDPTLSALQYPYFLRGVTNDHYQMYAIADLVEYFEWREVIAIFVDDDNGRNGISVLGDALSKKRARISYKAAFTPGAPRSDIDNLLVEVNLMESRVYVVHVNPDSGLDIFSVANRLGMMSKSYVWIATDWL...
XP_057796659.1
MEGRAAARRASLLLILCVFAGVGVAAQNGNSSVVNVGALFTFNSYIGRSLGPAISAAVEDVNSDTTILKDKKINPIFQDTNCSGFVGTIEAMQIMSKQVVAALGPQSSGIAHVISHVTNELHIPLISFATDPTLSALQYPYFLRGVTNDHYQMYAIADLVEYFEWREVIAIFVDDDNGRNGISVLGDALSKKRARISYKAAFTPGAPRSDIDNLLVEVNLMESRVYVVHVNPDSGLDIFSVANRLGMMSKSYVWIATDWL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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