当前解析结果
SmilChr02G000286| 统一新 Gene ID | SmilChr02G000286 |
|---|---|
| 名称 | SmilChr02G000286 |
| 描述 | glutamate receptor 3.7 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 3656537 - 3663506 / - |
| NCBI Gene ID | LOC131012684 |
|---|---|
| GeneID | 131012684 |
| locus_tag | - |
| NCBI Name | LOC131012684 |
| 原始查询 | SmilChr02G000286 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutamate receptor 3.7 |
| 产物 | glutamate receptor 3.7 |
| Arabidopsis | AT2G32400 (GLR5)glutamate receptor 5 [Source:NCBI gene (formerly Entrezgene);Acc:817801] identity=49.4; qcov=1; evalue=0; confidence=high |
| Rice | Os06g0680500 (OsGLR3.5)- identity=43.5; qcov=0.967; evalue=0; confidence=medium |
| GO | GO:0004970 (glutamate-gated receptor activity); GO:0005886 (plasma membrane) |
| KEGG | - |
| Pfam | PF00060 (Lig_chan); PF00497 (SBP_bac_3); PF01094 (ANF_receptor); PF10613 (Lig_chan-Glu_bd); PF13458 (Peripla_BP_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012684 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796661.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796661.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796661.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796661.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796661.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:3656917 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr2:3657070 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B103,B122,B131,C47 |
Chr2:3658792 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr2:3658882 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr2:3660293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:3660309 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,B94,C58 |
Chr2:3660493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B59,C39,C81,C87 |
Chr2:3660537 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B45 |
Chr2:3660591 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B51,C6 |
Chr2:3660604 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B12,B30,B31 |
Chr2:3660685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B12,B30,B31 |
Chr2:3660696 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796661.1PF13458
Peripla_BP_6 32-261 aa
PF01094
ANF_receptor 48-387 aa
PF10613
Lig_chan-Glu_bd 458-551 aa
PF00497
SBP_bac_3 506-789 aa
PF00060
Lig_chan 568-822 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796661.1 |
Pfam | PF13458 |
Peripla_BP_6 | Family | 32 | 261 | 8.6e-16 | 59.2 | Periplasmic binding protein |
XP_057796661.1 |
Pfam | PF01094 |
ANF_receptor | Domain | 48 | 387 | 2.3e-77 | 261.2 | Receptor family ligand binding region |
XP_057796661.1 |
Pfam | PF10613 |
Lig_chan-Glu_bd | Domain | 458 | 551 | 1.3e-09 | 38.8 | Ligated ion channel L-glutamate- and glycine-binding site |
XP_057796661.1 |
Pfam | PF00497 |
SBP_bac_3 | Domain | 506 | 789 | 8.7e-08 | 32.7 | Bacterial extracellular solute-binding proteins, family 3 |
XP_057796661.1 |
Pfam | PF00060 |
Lig_chan | Family | 568 | 822 | 1.9e-31 | 109.5 | Ligand-gated ion channel |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。