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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000291

染色体: Chr02 坐标: 3698017-3723614 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000291
名称SmilChr02G000291
描述pentatricopeptide repeat-containing protein At5g41170, mitochondrial-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向3698017 - 3723614 / +

ID 对照

NCBI Gene IDLOC131012688
GeneID131012688
locus_tag-
NCBI NameLOC131012688
原始查询SmilChr02G000291

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At5g41170, mitochondrial-like
产物pentatricopeptide repeat-containing protein At5g41170%2C mitochondrial-like
ArabidopsisAT1G62670 (RPF2)
rna processing factor 2 [Source:NCBI gene (formerly Entrezgene);Acc:842564]
identity=32.8; qcov=0.858; evalue=3.6e-106; confidence=low
RiceOs10g0495200 (Rf4)
-
identity=31.7; qcov=0.912; evalue=1.42e-106; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012688

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057796664.1
2 Nucleus 细胞核 0.00000 XP_057796664.1
3 Chromosome 染色体 0.00000 XP_057796664.1
4 Centromere 着丝粒 0.00000 XP_057796664.1
5 Chromatin 染色质 0.00000 XP_057796664.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:3698157 C T EMS_canonical_SNV CDS_variant 3 B11,B124,C34
Chr2:3698208 G A EMS_canonical_SNV CDS_variant 2 B11,B124
Chr2:3698229 C T EMS_canonical_SNV CDS_variant 5 B1,B54,B66,C68,C72
Chr2:3698231 C T EMS_canonical_SNV CDS_variant 5 B1,B54,B66,C68,C72
Chr2:3698305 G A EMS_canonical_SNV CDS_variant 3 B131,B19,B73
Chr2:3698336 C T EMS_canonical_SNV CDS_variant 3 A19,C76,C83
Chr2:3698384 G A EMS_canonical_SNV CDS_variant 2 B109,C29
Chr2:3698418 G A EMS_canonical_SNV CDS_variant 1 C83
Chr2:3698430 A ATG 2bp_insertion frameshift_variant 1 C86
Chr2:3698430 A ATG 2bp_insertion CDS_variant 1 C86
Chr2:3698432 GAA G 2bp_deletion frameshift_variant 1 C86
Chr2:3698432 GAA G 2bp_deletion CDS_variant 1 C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796664.1
703 aa
N
1
352
703
PPR
PPR_1
PPR
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
PPR_3
PPR
PPR_2
C
PF01535 PPR 79-107 aa PF12854 PPR_1 142-171 aa PF01535 PPR 147-174 aa PF13041 PPR_2 181-229 aa PF01535 PPR 188-212 aa PF23276 TPR_24 201-258 aa PF13812 PPR_3 206-264 aa PF12854 PPR_1 213-244 aa PF13041 PPR_2 215-264 aa PF01535 PPR 219-248 aa PF13812 PPR_3 238-295 aa PF12854 PPR_1 246-278 aa PF13041 PPR_2 250-298 aa PF01535 PPR 253-280 aa PF23276 TPR_24 255-344 aa PF13812 PPR_3 276-332 aa PF12854 PPR_1 282-312 aa PF01535 PPR 288-317 aa PF13812 PPR_3 309-364 aa PF12854 PPR_1 316-343 aa PF13041 PPR_2 320-368 aa PF01535 PPR 324-353 aa PF13812 PPR_3 344-400 aa PF12854 PPR_1 351-384 aa PF13041 PPR_2 356-393 aa PF01535 PPR 359-385 aa PF17177 PPR_long 372-490 aa PF13812 PPR_3 378-436 aa PF12854 PPR_1 388-419 aa PF13041 PPR_2 390-438 aa PF01535 PPR 394-423 aa PF12854 PPR_1 421-453 aa PF13041 PPR_2 425-474 aa PF01535 PPR 428-457 aa PF13812 PPR_3 449-504 aa PF12854 PPR_1 457-487 aa PF13041 PPR_2 461-508 aa PF01535 PPR 463-492 aa PF13041 PPR_2 496-544 aa PF01535 PPR 498-528 aa PF17177 PPR_long 512-643 aa PF13812 PPR_3 518-575 aa PF12854 PPR_1 527-559 aa PF01535 PPR 534-563 aa PF13041 PPR_2 539-579 aa PF12854 PPR_1 561-592 aa PF01535 PPR 568-598 aa PF13041 PPR_2 573-613 aa PF13812 PPR_3 588-644 aa PF01535 PPR 604-633 aa PF13041 PPR_2 605-644 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796664.1 Pfam PF01535 PPR Repeat 79 107 2.4e-107 344.7 PPR repeat
XP_057796664.1 Pfam PF12854 PPR_1 Repeat 142 171 1.2e-148 483.1 PPR repeat
XP_057796664.1 Pfam PF01535 PPR Repeat 147 174 2.4e-107 344.7 PPR repeat
XP_057796664.1 Pfam PF13041 PPR_2 Repeat 181 229 5e-172 558.7 PPR repeat family
XP_057796664.1 Pfam PF01535 PPR Repeat 188 212 2.4e-107 344.7 PPR repeat
XP_057796664.1 Pfam PF23276 TPR_24 Repeat 201 258 1.3e-37 129.4 Pentatricopeptide repeat-containing protein
XP_057796664.1 Pfam PF13812 PPR_3 Repeat 206 264 4.9e-71 235.4 Pentatricopeptide repeat domain
XP_057796664.1 Pfam PF12854 PPR_1 Repeat 213 244 1.2e-148 483.1 PPR repeat
XP_057796664.1 Pfam PF13041 PPR_2 Repeat 215 264 5e-172 558.7 PPR repeat family
XP_057796664.1 Pfam PF01535 PPR Repeat 219 248 2.4e-107 344.7 PPR repeat
XP_057796664.1 Pfam PF13812 PPR_3 Repeat 238 295 4.9e-71 235.4 Pentatricopeptide repeat domain
XP_057796664.1 Pfam PF12854 PPR_1 Repeat 246 278 1.2e-148 483.1 PPR repeat
XP_057796664.1 Pfam PF13041 PPR_2 Repeat 250 298 5e-172 558.7 PPR repeat family
XP_057796664.1 Pfam PF01535 PPR Repeat 253 280 2.4e-107 344.7 PPR repeat
XP_057796664.1 Pfam PF23276 TPR_24 Repeat 255 344 1.3e-37 129.4 Pentatricopeptide repeat-containing protein
XP_057796664.1 Pfam PF13812 PPR_3 Repeat 276 332 4.9e-71 235.4 Pentatricopeptide repeat domain
XP_057796664.1 Pfam PF12854 PPR_1 Repeat 282 312 1.2e-148 483.1 PPR repeat
XP_057796664.1 Pfam PF01535 PPR Repeat 288 317 2.4e-107 344.7 PPR repeat
XP_057796664.1 Pfam PF13812 PPR_3 Repeat 309 364 4.9e-71 235.4 Pentatricopeptide repeat domain
XP_057796664.1 Pfam PF12854 PPR_1 Repeat 316 343 1.2e-148 483.1 PPR repeat
XP_057796664.1 Pfam PF13041 PPR_2 Repeat 320 368 5e-172 558.7 PPR repeat family
XP_057796664.1 Pfam PF01535 PPR Repeat 324 353 2.4e-107 344.7 PPR repeat
XP_057796664.1 Pfam PF13812 PPR_3 Repeat 344 400 4.9e-71 235.4 Pentatricopeptide repeat domain
XP_057796664.1 Pfam PF12854 PPR_1 Repeat 351 384 1.2e-148 483.1 PPR repeat
XP_057796664.1 Pfam PF13041 PPR_2 Repeat 356 393 5e-172 558.7 PPR repeat family
XP_057796664.1 Pfam PF01535 PPR Repeat 359 385 2.4e-107 344.7 PPR repeat
XP_057796664.1 Pfam PF17177 PPR_long Repeat 372 490 7e-36 124.3 Pentacotripeptide-repeat region of PRORP
XP_057796664.1 Pfam PF13812 PPR_3 Repeat 378 436 4.9e-71 235.4 Pentatricopeptide repeat domain
XP_057796664.1 Pfam PF12854 PPR_1 Repeat 388 419 1.2e-148 483.1 PPR repeat
XP_057796664.1 Pfam PF13041 PPR_2 Repeat 390 438 5e-172 558.7 PPR repeat family
XP_057796664.1 Pfam PF01535 PPR Repeat 394 423 2.4e-107 344.7 PPR repeat
XP_057796664.1 Pfam PF12854 PPR_1 Repeat 421 453 1.2e-148 483.1 PPR repeat
XP_057796664.1 Pfam PF13041 PPR_2 Repeat 425 474 5e-172 558.7 PPR repeat family
XP_057796664.1 Pfam PF01535 PPR Repeat 428 457 2.4e-107 344.7 PPR repeat
XP_057796664.1 Pfam PF13812 PPR_3 Repeat 449 504 4.9e-71 235.4 Pentatricopeptide repeat domain
XP_057796664.1 Pfam PF12854 PPR_1 Repeat 457 487 1.2e-148 483.1 PPR repeat
XP_057796664.1 Pfam PF13041 PPR_2 Repeat 461 508 5e-172 558.7 PPR repeat family
XP_057796664.1 Pfam PF01535 PPR Repeat 463 492 2.4e-107 344.7 PPR repeat
XP_057796664.1 Pfam PF13041 PPR_2 Repeat 496 544 5e-172 558.7 PPR repeat family
XP_057796664.1 Pfam PF01535 PPR Repeat 498 528 2.4e-107 344.7 PPR repeat
XP_057796664.1 Pfam PF17177 PPR_long Repeat 512 643 7e-36 124.3 Pentacotripeptide-repeat region of PRORP
XP_057796664.1 Pfam PF13812 PPR_3 Repeat 518 575 4.9e-71 235.4 Pentatricopeptide repeat domain
XP_057796664.1 Pfam PF12854 PPR_1 Repeat 527 559 1.2e-148 483.1 PPR repeat
XP_057796664.1 Pfam PF01535 PPR Repeat 534 563 2.4e-107 344.7 PPR repeat
XP_057796664.1 Pfam PF13041 PPR_2 Repeat 539 579 5e-172 558.7 PPR repeat family
XP_057796664.1 Pfam PF12854 PPR_1 Repeat 561 592 1.2e-148 483.1 PPR repeat
XP_057796664.1 Pfam PF01535 PPR Repeat 568 598 2.4e-107 344.7 PPR repeat
XP_057796664.1 Pfam PF13041 PPR_2 Repeat 573 613 5e-172 558.7 PPR repeat family
XP_057796664.1 Pfam PF13812 PPR_3 Repeat 588 644 4.9e-71 235.4 Pentatricopeptide repeat domain
XP_057796664.1 Pfam PF01535 PPR Repeat 604 633 2.4e-107 344.7 PPR repeat
XP_057796664.1 Pfam PF13041 PPR_2 Repeat 605 644 5e-172 558.7 PPR repeat family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940681.1
TTTTCAGTAAATTTTGTACCTTACTTCAGATCTAATCTCTCTTTCTTCACATTAAATCTCACCGCCGATTAAGGATGATGGCCAGAAGAGCTGTCGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGACGGTCGCATAAATCGGGTATTCTCTCTCCTATGTTCTCTCTGTACTCTTCCGAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGTGTTAAAGAATTAAATGATGCTATTGAA...

CDS

1 records

下载 CDS FASTA
LOC131012688
ATGATGGCCAGAAGAGCTGTCGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGACGGTCGCATAAATCGGGTATTCTCTCTCCTATGTTCTCTCTGTACTCTTCCGAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGTGTTAAAGAATTAAATGATGCTATTGAATTGTTTCATAAAATAAAGAGTATGCGGAGAGAGCCTTCTGTTTACCTCTACAGCAAACTCATGAGTGTTAGTGT...

Protein

1 records

下载 Protein FASTA
XP_057796664.1
MMARRAVVSAIDLIHRRGFLNRRSHKSGILSPMFSLYSSEAFQPKQPRIDFSCVKELNDAIELFHKIKSMRREPSVYLYSKLMSVSVKIDQYYFALYVFDEMLRMGVPVDNYTRNIAVNCCCLLKDIYSAFAVMGFFLKRSYEPDVVTFSTLIKGLFLVNKEAEAVKLFEKILDLKLCEPDDVMILHMIDGLCKAGQVIEAHDWLHRLESSGWSPNVYAYSALIDGFCKSGMVDNAFKVLSKMVGNGILPDVVTYSSIIN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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