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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000292

染色体: Chr02 坐标: 3704299-3707126 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000292
名称SmilChr02G000292
描述pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向3704299 - 3707126 / +

ID 对照

NCBI Gene IDLOC131012689
GeneID131012689
locus_tag-
NCBI NameLOC131012689
原始查询SmilChr02G000292

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g62680%2C mitochondrial-like
ArabidopsisAT1G12620 (AT1G12620)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837818]
identity=32; qcov=0.906; evalue=7.03e-109; confidence=low
RiceOs10g0495200 (Rf4)
-
identity=31.4; qcov=0.874; evalue=1.04e-92; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012689

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057796665.1
2 Chloroplast 叶绿体 0.20000 XP_057796665.1
3 Nucleus 细胞核 0.00000 XP_057796665.1
4 Chromosome 染色体 0.00000 XP_057796665.1
5 Centromere 着丝粒 0.00000 XP_057796665.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:3704575 G A EMS_canonical_SNV CDS_variant 1 D11
Chr2:3704713 C T EMS_canonical_SNV CDS_variant 3 B101,B103,D11
Chr2:3704735 G A EMS_canonical_SNV CDS_variant 2 B124,B22
Chr2:3704811 G A EMS_canonical_SNV CDS_variant 2 B86,C5
Chr2:3704850 G A EMS_canonical_SNV CDS_variant 2 C17,C53
Chr2:3704851 C T EMS_canonical_SNV CDS_variant 3 B123,B53,B71
Chr2:3704898 G A EMS_canonical_SNV CDS_variant 1 C11
Chr2:3704907 G A EMS_canonical_SNV CDS_variant 1 B94
Chr2:3704931 G A EMS_canonical_SNV CDS_variant 3 A21,B124,B22
Chr2:3704952 CAG C 2bp_deletion frameshift_variant 1 C11
Chr2:3704952 CAG C 2bp_deletion CDS_variant 1 C11
Chr2:3704955 G GCA 2bp_insertion frameshift_variant 1 C11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796665.1
669 aa
N
1
334
669
PPR
PPR_1
PPR
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
TPR_24
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
C
PF01535 PPR 80-108 aa PF12854 PPR_1 141-172 aa PF01535 PPR 148-175 aa PF13041 PPR_2 188-230 aa PF01535 PPR 189-213 aa PF23276 TPR_24 189-260 aa PF13812 PPR_3 207-263 aa PF12854 PPR_1 214-245 aa PF01535 PPR 220-249 aa PF13041 PPR_2 220-262 aa PF13812 PPR_3 239-296 aa PF12854 PPR_1 247-279 aa PF13041 PPR_2 251-299 aa PF01535 PPR 255-281 aa PF23276 TPR_24 256-346 aa PF12854 PPR_1 283-313 aa PF01535 PPR 289-319 aa PF23276 TPR_24 308-418 aa PF13812 PPR_3 310-346 aa PF12854 PPR_1 317-344 aa PF13041 PPR_2 321-370 aa PF01535 PPR 325-354 aa PF13812 PPR_3 345-401 aa PF12854 PPR_1 352-385 aa PF23276 TPR_24 352-453 aa PF13041 PPR_2 357-404 aa PF01535 PPR 360-389 aa PF12854 PPR_1 387-419 aa PF13041 PPR_2 391-440 aa PF01535 PPR 394-424 aa PF13812 PPR_3 415-469 aa PF12854 PPR_1 422-453 aa PF13041 PPR_2 427-473 aa PF01535 PPR 429-458 aa PF13041 PPR_2 463-510 aa PF01535 PPR 464-493 aa PF17177 PPR_long 478-609 aa PF13812 PPR_3 484-541 aa PF12854 PPR_1 493-522 aa PF01535 PPR 500-529 aa PF13041 PPR_2 501-545 aa PF12854 PPR_1 527-558 aa PF13041 PPR_2 531-579 aa PF01535 PPR 534-563 aa PF13812 PPR_3 555-610 aa PF13041 PPR_2 566-610 aa PF01535 PPR 570-599 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796665.1 Pfam PF01535 PPR Repeat 80 108 1.6e-99 320.2 PPR repeat
XP_057796665.1 Pfam PF12854 PPR_1 Repeat 141 172 5.1e-132 430.0 PPR repeat
XP_057796665.1 Pfam PF01535 PPR Repeat 148 175 1.6e-99 320.2 PPR repeat
XP_057796665.1 Pfam PF13041 PPR_2 Repeat 188 230 1.3e-162 528.6 PPR repeat family
XP_057796665.1 Pfam PF01535 PPR Repeat 189 213 1.6e-99 320.2 PPR repeat
XP_057796665.1 Pfam PF23276 TPR_24 Repeat 189 260 4e-35 121.3 Pentatricopeptide repeat-containing protein
XP_057796665.1 Pfam PF13812 PPR_3 Repeat 207 263 2.4e-70 233.3 Pentatricopeptide repeat domain
XP_057796665.1 Pfam PF12854 PPR_1 Repeat 214 245 5.1e-132 430.0 PPR repeat
XP_057796665.1 Pfam PF01535 PPR Repeat 220 249 1.6e-99 320.2 PPR repeat
XP_057796665.1 Pfam PF13041 PPR_2 Repeat 220 262 1.3e-162 528.6 PPR repeat family
XP_057796665.1 Pfam PF13812 PPR_3 Repeat 239 296 2.4e-70 233.3 Pentatricopeptide repeat domain
XP_057796665.1 Pfam PF12854 PPR_1 Repeat 247 279 5.1e-132 430.0 PPR repeat
XP_057796665.1 Pfam PF13041 PPR_2 Repeat 251 299 1.3e-162 528.6 PPR repeat family
XP_057796665.1 Pfam PF01535 PPR Repeat 255 281 1.6e-99 320.2 PPR repeat
XP_057796665.1 Pfam PF23276 TPR_24 Repeat 256 346 4e-35 121.3 Pentatricopeptide repeat-containing protein
XP_057796665.1 Pfam PF12854 PPR_1 Repeat 283 313 5.1e-132 430.0 PPR repeat
XP_057796665.1 Pfam PF01535 PPR Repeat 289 319 1.6e-99 320.2 PPR repeat
XP_057796665.1 Pfam PF23276 TPR_24 Repeat 308 418 4e-35 121.3 Pentatricopeptide repeat-containing protein
XP_057796665.1 Pfam PF13812 PPR_3 Repeat 310 346 2.4e-70 233.3 Pentatricopeptide repeat domain
XP_057796665.1 Pfam PF12854 PPR_1 Repeat 317 344 5.1e-132 430.0 PPR repeat
XP_057796665.1 Pfam PF13041 PPR_2 Repeat 321 370 1.3e-162 528.6 PPR repeat family
XP_057796665.1 Pfam PF01535 PPR Repeat 325 354 1.6e-99 320.2 PPR repeat
XP_057796665.1 Pfam PF13812 PPR_3 Repeat 345 401 2.4e-70 233.3 Pentatricopeptide repeat domain
XP_057796665.1 Pfam PF12854 PPR_1 Repeat 352 385 5.1e-132 430.0 PPR repeat
XP_057796665.1 Pfam PF23276 TPR_24 Repeat 352 453 4e-35 121.3 Pentatricopeptide repeat-containing protein
XP_057796665.1 Pfam PF13041 PPR_2 Repeat 357 404 1.3e-162 528.6 PPR repeat family
XP_057796665.1 Pfam PF01535 PPR Repeat 360 389 1.6e-99 320.2 PPR repeat
XP_057796665.1 Pfam PF12854 PPR_1 Repeat 387 419 5.1e-132 430.0 PPR repeat
XP_057796665.1 Pfam PF13041 PPR_2 Repeat 391 440 1.3e-162 528.6 PPR repeat family
XP_057796665.1 Pfam PF01535 PPR Repeat 394 424 1.6e-99 320.2 PPR repeat
XP_057796665.1 Pfam PF13812 PPR_3 Repeat 415 469 2.4e-70 233.3 Pentatricopeptide repeat domain
XP_057796665.1 Pfam PF12854 PPR_1 Repeat 422 453 5.1e-132 430.0 PPR repeat
XP_057796665.1 Pfam PF13041 PPR_2 Repeat 427 473 1.3e-162 528.6 PPR repeat family
XP_057796665.1 Pfam PF01535 PPR Repeat 429 458 1.6e-99 320.2 PPR repeat
XP_057796665.1 Pfam PF13041 PPR_2 Repeat 463 510 1.3e-162 528.6 PPR repeat family
XP_057796665.1 Pfam PF01535 PPR Repeat 464 493 1.6e-99 320.2 PPR repeat
XP_057796665.1 Pfam PF17177 PPR_long Repeat 478 609 1.2e-31 110.4 Pentacotripeptide-repeat region of PRORP
XP_057796665.1 Pfam PF13812 PPR_3 Repeat 484 541 2.4e-70 233.3 Pentatricopeptide repeat domain
XP_057796665.1 Pfam PF12854 PPR_1 Repeat 493 522 5.1e-132 430.0 PPR repeat
XP_057796665.1 Pfam PF01535 PPR Repeat 500 529 1.6e-99 320.2 PPR repeat
XP_057796665.1 Pfam PF13041 PPR_2 Repeat 501 545 1.3e-162 528.6 PPR repeat family
XP_057796665.1 Pfam PF12854 PPR_1 Repeat 527 558 5.1e-132 430.0 PPR repeat
XP_057796665.1 Pfam PF13041 PPR_2 Repeat 531 579 1.3e-162 528.6 PPR repeat family
XP_057796665.1 Pfam PF01535 PPR Repeat 534 563 1.6e-99 320.2 PPR repeat
XP_057796665.1 Pfam PF13812 PPR_3 Repeat 555 610 2.4e-70 233.3 Pentatricopeptide repeat domain
XP_057796665.1 Pfam PF13041 PPR_2 Repeat 566 610 1.3e-162 528.6 PPR repeat family
XP_057796665.1 Pfam PF01535 PPR Repeat 570 599 1.6e-99 320.2 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940682.1
AATCAGCATAAAATTTTCAGTAAAATCGCAAACTCCATTCATCCCAACCTGACCGATTAAGGATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGATGGTCGCAGCATAAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCAGTGTTAAAGAATTAAATGATGCTATTGAATTGTTTCAT...

CDS

1 records

下载 CDS FASTA
LOC131012689
ATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGATGGTCGCAGCATAAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCAGTGTTAAAGAATTAAATGATGCTATTGAATTGTTTCATAAAATAAAGAGTATGCGGCCAGAGCCTTCTGTTCACCTCTACAACAAACTCATGAGTGTTAG...

Protein

1 records

下载 Protein FASTA
XP_057796665.1
MMARRAVVSAIDLIHRRGFLNRWSQHKSGILSPLFSLFSSEAFQPKQPRIDFSSVKELNDAIELFHKIKSMRPEPSVHLYNKLMSVSAKIEQYYFALDVFDEMLGMGVPVNNYTRNIAVNCCCLLKDIYSAFSIMGFFLKRGHEPDVVTFGTLIKGLFLVNKEAEAVKLFEKILDLKLCEPSDVMILHVIDGLCKAGQVIEAHDWLHRLESSGWSPNVYAYSALIDGFCKSGMVDNAFKVLSKMVGNGILPDVLTYSSII...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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