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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000294

染色体: Chr02 坐标: 3720816-3723614 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000294
名称SmilChr02G000294
描述pentatricopeptide repeat-containing protein At1g62720-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向3720816 - 3723614 / +

ID 对照

NCBI Gene IDLOC131012690
GeneID131012690
locus_tag-
NCBI NameLOC131012690
原始查询SmilChr02G000294

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g62720-like
产物pentatricopeptide repeat-containing protein At1g62720-like
ArabidopsisAT1G12620 (AT1G12620)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837818]
identity=32.4; qcov=0.91; evalue=2.36e-110; confidence=low
RiceOs10g0495200 (Rf4)
-
identity=31.9; qcov=0.904; evalue=1.59e-97; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012690

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057796666.1
2 Chloroplast 叶绿体 0.20000 XP_057796666.1
3 Nucleus 细胞核 0.00000 XP_057796666.1
4 Chromosome 染色体 0.00000 XP_057796666.1
5 Centromere 着丝粒 0.00000 XP_057796666.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:3720999 G A EMS_canonical_SNV CDS_variant 2 B5,B99
Chr2:3721034 C T EMS_canonical_SNV CDS_variant 2 B5,B99
Chr2:3721046 AG A 1bp_deletion frameshift_variant 1 C17
Chr2:3721046 AG A 1bp_deletion CDS_variant 1 C17
Chr2:3721087 G A EMS_canonical_SNV CDS_variant 3 A5,B54,C83
Chr2:3721173 G A EMS_canonical_SNV CDS_variant 2 B105,B88
Chr2:3721225 G A EMS_canonical_SNV CDS_variant 1 C48
Chr2:3721231 C T EMS_canonical_SNV CDS_variant 3 B110,B134,C19
Chr2:3721250 C T EMS_canonical_SNV CDS_variant 5 B62,B95,C74,C79,C84
Chr2:3721283 G A EMS_canonical_SNV CDS_variant 4 B46,B7,C45,C60
Chr2:3721329 G A EMS_canonical_SNV CDS_variant 5 A11,B133,B54,C32,C52
Chr2:3721368 G A EMS_canonical_SNV CDS_variant 3 B86,C17,C53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796666.1
669 aa
N
1
334
669
PPR_2
PPR_3
PPR_1
PPR
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_long
PPR_3
TPR_24
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
PPR_3
PPR_2
PPR
C
PF13041 PPR_2 75-123 aa PF13812 PPR_3 99-155 aa PF12854 PPR_1 141-172 aa PF01535 PPR 148-175 aa PF13041 PPR_2 188-230 aa PF01535 PPR 189-213 aa PF23276 TPR_24 189-260 aa PF13812 PPR_3 207-265 aa PF12854 PPR_1 215-245 aa PF01535 PPR 219-249 aa PF13041 PPR_2 223-265 aa PF13812 PPR_3 240-296 aa PF12854 PPR_1 247-279 aa PF13041 PPR_2 251-299 aa PF01535 PPR 254-281 aa PF23276 TPR_24 255-346 aa PF13812 PPR_3 277-333 aa PF12854 PPR_1 283-313 aa PF01535 PPR 289-319 aa PF23276 TPR_24 307-418 aa PF13812 PPR_3 310-346 aa PF12854 PPR_1 317-344 aa PF13041 PPR_2 321-370 aa PF01535 PPR 325-354 aa PF13812 PPR_3 345-401 aa PF12854 PPR_1 352-385 aa PF13041 PPR_2 357-404 aa PF01535 PPR 360-389 aa PF12854 PPR_1 387-419 aa PF13041 PPR_2 391-440 aa PF01535 PPR 394-423 aa PF13812 PPR_3 415-470 aa PF12854 PPR_1 423-454 aa PF13041 PPR_2 426-458 aa PF01535 PPR 429-455 aa PF13041 PPR_2 462-510 aa PF01535 PPR 464-494 aa PF17177 PPR_long 479-608 aa PF13812 PPR_3 484-541 aa PF23276 TPR_24 487-559 aa PF12854 PPR_1 493-525 aa PF01535 PPR 500-529 aa PF13041 PPR_2 504-545 aa PF12854 PPR_1 527-557 aa PF01535 PPR 534-564 aa PF13041 PPR_2 539-579 aa PF13812 PPR_3 555-610 aa PF13041 PPR_2 566-610 aa PF01535 PPR 570-599 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796666.1 Pfam PF13041 PPR_2 Repeat 75 123 1.3e-155 506.1 PPR repeat family
XP_057796666.1 Pfam PF13812 PPR_3 Repeat 99 155 7.7e-71 234.8 Pentatricopeptide repeat domain
XP_057796666.1 Pfam PF12854 PPR_1 Repeat 141 172 7.5e-137 445.4 PPR repeat
XP_057796666.1 Pfam PF01535 PPR Repeat 148 175 3.1e-100 322.4 PPR repeat
XP_057796666.1 Pfam PF13041 PPR_2 Repeat 188 230 1.3e-155 506.1 PPR repeat family
XP_057796666.1 Pfam PF01535 PPR Repeat 189 213 3.1e-100 322.4 PPR repeat
XP_057796666.1 Pfam PF23276 TPR_24 Repeat 189 260 5.3e-37 127.4 Pentatricopeptide repeat-containing protein
XP_057796666.1 Pfam PF13812 PPR_3 Repeat 207 265 7.7e-71 234.8 Pentatricopeptide repeat domain
XP_057796666.1 Pfam PF12854 PPR_1 Repeat 215 245 7.5e-137 445.4 PPR repeat
XP_057796666.1 Pfam PF01535 PPR Repeat 219 249 3.1e-100 322.4 PPR repeat
XP_057796666.1 Pfam PF13041 PPR_2 Repeat 223 265 1.3e-155 506.1 PPR repeat family
XP_057796666.1 Pfam PF13812 PPR_3 Repeat 240 296 7.7e-71 234.8 Pentatricopeptide repeat domain
XP_057796666.1 Pfam PF12854 PPR_1 Repeat 247 279 7.5e-137 445.4 PPR repeat
XP_057796666.1 Pfam PF13041 PPR_2 Repeat 251 299 1.3e-155 506.1 PPR repeat family
XP_057796666.1 Pfam PF01535 PPR Repeat 254 281 3.1e-100 322.4 PPR repeat
XP_057796666.1 Pfam PF23276 TPR_24 Repeat 255 346 5.3e-37 127.4 Pentatricopeptide repeat-containing protein
XP_057796666.1 Pfam PF13812 PPR_3 Repeat 277 333 7.7e-71 234.8 Pentatricopeptide repeat domain
XP_057796666.1 Pfam PF12854 PPR_1 Repeat 283 313 7.5e-137 445.4 PPR repeat
XP_057796666.1 Pfam PF01535 PPR Repeat 289 319 3.1e-100 322.4 PPR repeat
XP_057796666.1 Pfam PF23276 TPR_24 Repeat 307 418 5.3e-37 127.4 Pentatricopeptide repeat-containing protein
XP_057796666.1 Pfam PF13812 PPR_3 Repeat 310 346 7.7e-71 234.8 Pentatricopeptide repeat domain
XP_057796666.1 Pfam PF12854 PPR_1 Repeat 317 344 7.5e-137 445.4 PPR repeat
XP_057796666.1 Pfam PF13041 PPR_2 Repeat 321 370 1.3e-155 506.1 PPR repeat family
XP_057796666.1 Pfam PF01535 PPR Repeat 325 354 3.1e-100 322.4 PPR repeat
XP_057796666.1 Pfam PF13812 PPR_3 Repeat 345 401 7.7e-71 234.8 Pentatricopeptide repeat domain
XP_057796666.1 Pfam PF12854 PPR_1 Repeat 352 385 7.5e-137 445.4 PPR repeat
XP_057796666.1 Pfam PF13041 PPR_2 Repeat 357 404 1.3e-155 506.1 PPR repeat family
XP_057796666.1 Pfam PF01535 PPR Repeat 360 389 3.1e-100 322.4 PPR repeat
XP_057796666.1 Pfam PF12854 PPR_1 Repeat 387 419 7.5e-137 445.4 PPR repeat
XP_057796666.1 Pfam PF13041 PPR_2 Repeat 391 440 1.3e-155 506.1 PPR repeat family
XP_057796666.1 Pfam PF01535 PPR Repeat 394 423 3.1e-100 322.4 PPR repeat
XP_057796666.1 Pfam PF13812 PPR_3 Repeat 415 470 7.7e-71 234.8 Pentatricopeptide repeat domain
XP_057796666.1 Pfam PF12854 PPR_1 Repeat 423 454 7.5e-137 445.4 PPR repeat
XP_057796666.1 Pfam PF13041 PPR_2 Repeat 426 458 1.3e-155 506.1 PPR repeat family
XP_057796666.1 Pfam PF01535 PPR Repeat 429 455 3.1e-100 322.4 PPR repeat
XP_057796666.1 Pfam PF13041 PPR_2 Repeat 462 510 1.3e-155 506.1 PPR repeat family
XP_057796666.1 Pfam PF01535 PPR Repeat 464 494 3.1e-100 322.4 PPR repeat
XP_057796666.1 Pfam PF17177 PPR_long Repeat 479 608 3e-31 109.2 Pentacotripeptide-repeat region of PRORP
XP_057796666.1 Pfam PF13812 PPR_3 Repeat 484 541 7.7e-71 234.8 Pentatricopeptide repeat domain
XP_057796666.1 Pfam PF23276 TPR_24 Repeat 487 559 5.3e-37 127.4 Pentatricopeptide repeat-containing protein
XP_057796666.1 Pfam PF12854 PPR_1 Repeat 493 525 7.5e-137 445.4 PPR repeat
XP_057796666.1 Pfam PF01535 PPR Repeat 500 529 3.1e-100 322.4 PPR repeat
XP_057796666.1 Pfam PF13041 PPR_2 Repeat 504 545 1.3e-155 506.1 PPR repeat family
XP_057796666.1 Pfam PF12854 PPR_1 Repeat 527 557 7.5e-137 445.4 PPR repeat
XP_057796666.1 Pfam PF01535 PPR Repeat 534 564 3.1e-100 322.4 PPR repeat
XP_057796666.1 Pfam PF13041 PPR_2 Repeat 539 579 1.3e-155 506.1 PPR repeat family
XP_057796666.1 Pfam PF13812 PPR_3 Repeat 555 610 7.7e-71 234.8 Pentatricopeptide repeat domain
XP_057796666.1 Pfam PF13041 PPR_2 Repeat 566 610 1.3e-155 506.1 PPR repeat family
XP_057796666.1 Pfam PF01535 PPR Repeat 570 599 3.1e-100 322.4 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940683.1
AAATCAGCATAAAATTTTCAGTAAAATCGCAAACTCCATTCTTCCCAACCTGACCGATTAAGGATGATGGCCAGAAGAGCTTCAGCTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGATGGTCGCAGCATAAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCGGTCTAGAATCGATTTCAGTAGTGTTAAAGAAGTAGACGATGTTATTGAATTGTTTCA...

CDS

1 records

下载 CDS FASTA
LOC131012690
ATGATGGCCAGAAGAGCTTCAGCTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGATGGTCGCAGCATAAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCGGTCTAGAATCGATTTCAGTAGTGTTAAAGAAGTAGACGATGTTATTGAATTGTTTCAAAAAATAAAGAGTATTCGGCAAGAGCCTTCTGTTCGCCTGTATAACAAACTCATGAGCGTTAG...

Protein

1 records

下载 Protein FASTA
XP_057796666.1
MMARRASASAIDLIHRRGFLNRWSQHKSGILSPLFSLFSSEAFQPKRSRIDFSSVKEVDDVIELFQKIKSIRQEPSVRLYNKLMSVSVTIEQYYIALDVFDEMLRMGVSVDIYTMSIAVNCCCLLKDIYSAFSIMGFFLKRGHEPNVVTFGTLIKGLFLVNKEAEAVKLFEKILDLKLCEPDGIMILHVIDGLCKTGQVIEAHDWLHRLESSGWSLDVYTYSALIDGFCKGGMVDNAFKVLSKMVGNGILPDVVTYSSII...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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