当前解析结果
SmilChr02G000299| 统一新 Gene ID | SmilChr02G000299 |
|---|---|
| 名称 | SmilChr02G000299 |
| 描述 | pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 3771416 - 3774441 / + |
| NCBI Gene ID | LOC131012695 |
|---|---|
| GeneID | 131012695 |
| locus_tag | - |
| NCBI Name | LOC131012695 |
| 原始查询 | SmilChr02G000299 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At1g62680%2C mitochondrial-like |
| Arabidopsis | AT1G12620 (AT1G12620)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837818] identity=32.3; qcov=0.897; evalue=7.78e-110; confidence=low |
| Rice | Os10g0495200 (Rf4)- identity=30.8; qcov=0.883; evalue=1.64e-87; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012695 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057796668.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796668.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796668.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796668.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796668.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:3771469 |
CTG |
C |
2bp_deletion | frameshift_variant | 1 | B127 |
Chr2:3771469 |
CTG |
C |
2bp_deletion | CDS_variant | 1 | B127 |
Chr2:3771473 |
T |
TCA |
2bp_insertion | frameshift_variant | 1 | B127 |
Chr2:3771473 |
T |
TCA |
2bp_insertion | CDS_variant | 1 | B127 |
Chr2:3771480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B35,B79,C51 |
Chr2:3771499 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B35,B79,C51 |
Chr2:3771536 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B95,C68,C79 |
Chr2:3771537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,C68,C79 |
Chr2:3771573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B119,C6,C71 |
Chr2:3771608 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B119,C71,D8 |
Chr2:3771628 |
ACG |
A |
2bp_deletion | frameshift_variant | 2 | B126,B84 |
Chr2:3771628 |
ACG |
A |
2bp_deletion | CDS_variant | 2 | B126,B84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796668.1PF01535
PPR 80-108 aa
PF12854
PPR_1 141-172 aa
PF01535
PPR 148-175 aa
PF13041
PPR_2 188-230 aa
PF01535
PPR 189-213 aa
PF17177
PPR_long 201-306 aa
PF13812
PPR_3 207-261 aa
PF12854
PPR_1 214-244 aa
PF01535
PPR 219-248 aa
PF13041
PPR_2 221-264 aa
PF12854
PPR_1 248-278 aa
PF01535
PPR 254-284 aa
PF13812
PPR_3 275-330 aa
PF12854
PPR_1 282-309 aa
PF13041
PPR_2 286-334 aa
PF01535
PPR 290-319 aa
PF13812
PPR_3 310-365 aa
PF12854
PPR_1 317-350 aa
PF13041
PPR_2 322-359 aa
PF01535
PPR 325-351 aa
PF17177
PPR_long 338-456 aa
PF13812
PPR_3 344-401 aa
PF12854
PPR_1 354-385 aa
PF13041
PPR_2 356-404 aa
PF01535
PPR 360-389 aa
PF13812
PPR_3 380-438 aa
PF12854
PPR_1 387-419 aa
PF01535
PPR 394-423 aa
PF13041
PPR_2 398-440 aa
PF13812
PPR_3 415-470 aa
PF12854
PPR_1 423-454 aa
PF13041
PPR_2 427-474 aa
PF01535
PPR 429-458 aa
PF13041
PPR_2 462-510 aa
PF01535
PPR 465-494 aa
PF17177
PPR_long 478-609 aa
PF13812
PPR_3 484-541 aa
PF23276
TPR_24 487-553 aa
PF12854
PPR_1 493-525 aa
PF01535
PPR 500-529 aa
PF13041
PPR_2 507-545 aa
PF12854
PPR_1 527-557 aa
PF01535
PPR 534-564 aa
PF13041
PPR_2 539-579 aa
PF13812
PPR_3 555-610 aa
PF13041
PPR_2 566-610 aa
PF01535
PPR 570-599 aa
XP_057796669.1PF01535
PPR 80-108 aa
PF12854
PPR_1 141-172 aa
PF01535
PPR 148-175 aa
PF13041
PPR_2 188-230 aa
PF01535
PPR 189-213 aa
PF17177
PPR_long 201-306 aa
PF13812
PPR_3 207-261 aa
PF12854
PPR_1 214-244 aa
PF01535
PPR 219-248 aa
PF13041
PPR_2 221-264 aa
PF12854
PPR_1 248-278 aa
PF01535
PPR 254-284 aa
PF13812
PPR_3 275-330 aa
PF12854
PPR_1 282-309 aa
PF13041
PPR_2 286-334 aa
PF01535
PPR 290-319 aa
PF13812
PPR_3 310-365 aa
PF12854
PPR_1 317-350 aa
PF13041
PPR_2 322-359 aa
PF01535
PPR 325-351 aa
PF17177
PPR_long 338-456 aa
PF13812
PPR_3 344-401 aa
PF12854
PPR_1 354-385 aa
PF13041
PPR_2 356-404 aa
PF01535
PPR 360-389 aa
PF13812
PPR_3 380-438 aa
PF12854
PPR_1 387-419 aa
PF01535
PPR 394-423 aa
PF13041
PPR_2 398-440 aa
PF13812
PPR_3 415-470 aa
PF12854
PPR_1 423-454 aa
PF13041
PPR_2 427-474 aa
PF01535
PPR 429-458 aa
PF13041
PPR_2 462-510 aa
PF01535
PPR 465-494 aa
PF17177
PPR_long 478-609 aa
PF13812
PPR_3 484-541 aa
PF23276
TPR_24 487-553 aa
PF12854
PPR_1 493-525 aa
PF01535
PPR 500-529 aa
PF13041
PPR_2 507-545 aa
PF12854
PPR_1 527-557 aa
PF01535
PPR 534-564 aa
PF13041
PPR_2 539-579 aa
PF13812
PPR_3 555-610 aa
PF13041
PPR_2 566-610 aa
PF01535
PPR 570-599 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796668.1 |
Pfam | PF01535 |
PPR | Repeat | 80 | 108 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796668.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 141 | 172 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796668.1 |
Pfam | PF01535 |
PPR | Repeat | 148 | 175 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796668.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 188 | 230 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796668.1 |
Pfam | PF01535 |
PPR | Repeat | 189 | 213 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796668.1 |
Pfam | PF17177 |
PPR_long | Repeat | 201 | 306 | 1.6e-32 | 113.3 | Pentacotripeptide-repeat region of PRORP |
XP_057796668.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 207 | 261 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796668.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 214 | 244 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796668.1 |
Pfam | PF01535 |
PPR | Repeat | 219 | 248 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796668.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 221 | 264 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796668.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 248 | 278 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796668.1 |
Pfam | PF01535 |
PPR | Repeat | 254 | 284 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796668.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 275 | 330 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796668.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 282 | 309 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796668.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 286 | 334 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796668.1 |
Pfam | PF01535 |
PPR | Repeat | 290 | 319 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796668.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 310 | 365 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796668.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 317 | 350 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796668.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 322 | 359 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796668.1 |
Pfam | PF01535 |
PPR | Repeat | 325 | 351 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796668.1 |
Pfam | PF17177 |
PPR_long | Repeat | 338 | 456 | 1.6e-32 | 113.3 | Pentacotripeptide-repeat region of PRORP |
XP_057796668.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 344 | 401 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796668.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 354 | 385 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796668.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 356 | 404 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796668.1 |
Pfam | PF01535 |
PPR | Repeat | 360 | 389 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796668.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 380 | 438 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796668.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 387 | 419 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796668.1 |
Pfam | PF01535 |
PPR | Repeat | 394 | 423 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796668.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 398 | 440 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796668.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 415 | 470 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796668.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 423 | 454 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796668.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 427 | 474 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796668.1 |
Pfam | PF01535 |
PPR | Repeat | 429 | 458 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796668.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 462 | 510 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796668.1 |
Pfam | PF01535 |
PPR | Repeat | 465 | 494 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796668.1 |
Pfam | PF17177 |
PPR_long | Repeat | 478 | 609 | 1.6e-32 | 113.3 | Pentacotripeptide-repeat region of PRORP |
XP_057796668.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 484 | 541 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796668.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 487 | 553 | 1.3e-33 | 116.4 | Pentatricopeptide repeat-containing protein |
XP_057796668.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 493 | 525 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796668.1 |
Pfam | PF01535 |
PPR | Repeat | 500 | 529 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796668.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 507 | 545 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796668.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 527 | 557 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796668.1 |
Pfam | PF01535 |
PPR | Repeat | 534 | 564 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796668.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 539 | 579 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796668.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 555 | 610 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796668.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 566 | 610 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796668.1 |
Pfam | PF01535 |
PPR | Repeat | 570 | 599 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796669.1 |
Pfam | PF01535 |
PPR | Repeat | 80 | 108 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796669.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 141 | 172 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796669.1 |
Pfam | PF01535 |
PPR | Repeat | 148 | 175 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796669.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 188 | 230 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796669.1 |
Pfam | PF01535 |
PPR | Repeat | 189 | 213 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796669.1 |
Pfam | PF17177 |
PPR_long | Repeat | 201 | 306 | 1.6e-32 | 113.3 | Pentacotripeptide-repeat region of PRORP |
XP_057796669.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 207 | 261 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796669.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 214 | 244 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796669.1 |
Pfam | PF01535 |
PPR | Repeat | 219 | 248 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796669.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 221 | 264 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796669.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 248 | 278 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796669.1 |
Pfam | PF01535 |
PPR | Repeat | 254 | 284 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796669.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 275 | 330 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796669.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 282 | 309 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796669.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 286 | 334 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796669.1 |
Pfam | PF01535 |
PPR | Repeat | 290 | 319 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796669.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 310 | 365 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796669.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 317 | 350 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796669.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 322 | 359 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796669.1 |
Pfam | PF01535 |
PPR | Repeat | 325 | 351 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796669.1 |
Pfam | PF17177 |
PPR_long | Repeat | 338 | 456 | 1.6e-32 | 113.3 | Pentacotripeptide-repeat region of PRORP |
XP_057796669.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 344 | 401 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796669.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 354 | 385 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796669.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 356 | 404 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796669.1 |
Pfam | PF01535 |
PPR | Repeat | 360 | 389 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796669.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 380 | 438 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796669.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 387 | 419 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796669.1 |
Pfam | PF01535 |
PPR | Repeat | 394 | 423 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796669.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 398 | 440 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796669.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 415 | 470 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796669.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 423 | 454 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796669.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 427 | 474 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796669.1 |
Pfam | PF01535 |
PPR | Repeat | 429 | 458 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796669.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 462 | 510 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796669.1 |
Pfam | PF01535 |
PPR | Repeat | 465 | 494 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796669.1 |
Pfam | PF17177 |
PPR_long | Repeat | 478 | 609 | 1.6e-32 | 113.3 | Pentacotripeptide-repeat region of PRORP |
XP_057796669.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 484 | 541 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796669.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 487 | 553 | 1.3e-33 | 116.4 | Pentatricopeptide repeat-containing protein |
XP_057796669.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 493 | 525 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796669.1 |
Pfam | PF01535 |
PPR | Repeat | 500 | 529 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796669.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 507 | 545 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796669.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 527 | 557 | 2.8e-127 | 414.8 | PPR repeat |
XP_057796669.1 |
Pfam | PF01535 |
PPR | Repeat | 534 | 564 | 1.7e-95 | 307.5 | PPR repeat |
XP_057796669.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 539 | 579 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796669.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 555 | 610 | 8.5e-66 | 218.7 | Pentatricopeptide repeat domain |
XP_057796669.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 566 | 610 | 6.1e-144 | 468.8 | PPR repeat family |
XP_057796669.1 |
Pfam | PF01535 |
PPR | Repeat | 570 | 599 | 1.7e-95 | 307.5 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。