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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000342

染色体: Chr02 坐标: 4447221-4449321 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000342
名称SmilChr02G000342
描述pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向4447221 - 4449321 / -

ID 对照

NCBI Gene IDLOC131012725
GeneID131012725
locus_tag-
NCBI NameLOC131012725
原始查询SmilChr02G000342

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g12775%2C mitochondrial-like
ArabidopsisAT1G12775 (AT1G12775)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:3766712]
identity=35.2; qcov=1.04; evalue=1.81e-132; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=31.4; qcov=0.905; evalue=2.22e-86; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012725

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057796701.1
2 Chloroplast 叶绿体 0.20000 XP_057796701.1
3 Nucleus 细胞核 0.00000 XP_057796701.1
4 Chromosome 染色体 0.00000 XP_057796701.1
5 Centromere 着丝粒 0.00000 XP_057796701.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:4447464 C T EMS_canonical_SNV CDS_variant 1 A15
Chr2:4447502 C T EMS_canonical_SNV CDS_variant 2 A2,B103
Chr2:4447509 TC T 1bp_deletion frameshift_variant 1 B135
Chr2:4447509 TC T 1bp_deletion CDS_variant 1 B135
Chr2:4447528 T TC 1bp_insertion frameshift_variant 7 A21,B128,B69,B93,C16,C76,C78
Chr2:4447544 C T EMS_canonical_SNV CDS_variant 4 A7,B104,B84,C52
Chr2:4447578 C T EMS_canonical_SNV CDS_variant 1 B104
Chr2:4447604 C T EMS_canonical_SNV CDS_variant 1 B20
Chr2:4447605 G A EMS_canonical_SNV CDS_variant 5 B131,B62,B79,C20,C42
Chr2:4447612 C T EMS_canonical_SNV CDS_variant 1 B20
Chr2:4447657 G A EMS_canonical_SNV CDS_variant 1 B121
Chr2:4447726 G A EMS_canonical_SNV CDS_variant 1 C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796701.1
598 aa
N
1
299
598
PPR_3
PPR
PPR_1
PPR
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_long
PPR_1
PPR_2
PPR
PPR_3
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR
C
PF13812 PPR_3 54-87 aa PF01535 PPR 78-107 aa PF12854 PPR_1 140-171 aa PF01535 PPR 148-177 aa PF01535 PPR 187-211 aa PF23276 TPR_24 201-306 aa PF13812 PPR_3 204-260 aa PF12854 PPR_1 213-243 aa PF13041 PPR_2 215-264 aa PF01535 PPR 219-248 aa PF12854 PPR_1 246-278 aa PF13041 PPR_2 250-299 aa PF01535 PPR 253-283 aa PF17177 PPR_long 270-365 aa PF13812 PPR_3 274-332 aa PF12854 PPR_1 282-314 aa PF13041 PPR_2 286-333 aa PF01535 PPR 288-318 aa PF23276 TPR_24 306-417 aa PF13812 PPR_3 313-367 aa PF12854 PPR_1 316-349 aa PF13041 PPR_2 320-369 aa PF01535 PPR 323-353 aa PF12854 PPR_1 351-380 aa PF13041 PPR_2 355-402 aa PF01535 PPR 358-387 aa PF12854 PPR_1 386-418 aa PF13041 PPR_2 391-439 aa PF01535 PPR 394-421 aa PF13812 PPR_3 413-470 aa PF12854 PPR_1 423-451 aa PF01535 PPR 428-458 aa PF13041 PPR_2 432-474 aa PF17177 PPR_long 453-573 aa PF12854 PPR_1 456-487 aa PF13041 PPR_2 460-497 aa PF01535 PPR 463-493 aa PF13812 PPR_3 463-507 aa PF23276 TPR_24 468-577 aa PF12854 PPR_1 491-524 aa PF13041 PPR_2 495-542 aa PF01535 PPR 499-528 aa PF13812 PPR_3 519-569 aa PF01535 PPR 534-563 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796701.1 Pfam PF13812 PPR_3 Repeat 54 87 5.8e-65 216.0 Pentatricopeptide repeat domain
XP_057796701.1 Pfam PF01535 PPR Repeat 78 107 1.2e-92 298.6 PPR repeat
XP_057796701.1 Pfam PF12854 PPR_1 Repeat 140 171 2.5e-119 389.4 PPR repeat
XP_057796701.1 Pfam PF01535 PPR Repeat 148 177 1.2e-92 298.6 PPR repeat
XP_057796701.1 Pfam PF01535 PPR Repeat 187 211 1.2e-92 298.6 PPR repeat
XP_057796701.1 Pfam PF23276 TPR_24 Repeat 201 306 7.4e-39 133.4 Pentatricopeptide repeat-containing protein
XP_057796701.1 Pfam PF13812 PPR_3 Repeat 204 260 5.8e-65 216.0 Pentatricopeptide repeat domain
XP_057796701.1 Pfam PF12854 PPR_1 Repeat 213 243 2.5e-119 389.4 PPR repeat
XP_057796701.1 Pfam PF13041 PPR_2 Repeat 215 264 1.3e-156 509.3 PPR repeat family
XP_057796701.1 Pfam PF01535 PPR Repeat 219 248 1.2e-92 298.6 PPR repeat
XP_057796701.1 Pfam PF12854 PPR_1 Repeat 246 278 2.5e-119 389.4 PPR repeat
XP_057796701.1 Pfam PF13041 PPR_2 Repeat 250 299 1.3e-156 509.3 PPR repeat family
XP_057796701.1 Pfam PF01535 PPR Repeat 253 283 1.2e-92 298.6 PPR repeat
XP_057796701.1 Pfam PF17177 PPR_long Repeat 270 365 1.2e-33 117.0 Pentacotripeptide-repeat region of PRORP
XP_057796701.1 Pfam PF13812 PPR_3 Repeat 274 332 5.8e-65 216.0 Pentatricopeptide repeat domain
XP_057796701.1 Pfam PF12854 PPR_1 Repeat 282 314 2.5e-119 389.4 PPR repeat
XP_057796701.1 Pfam PF13041 PPR_2 Repeat 286 333 1.3e-156 509.3 PPR repeat family
XP_057796701.1 Pfam PF01535 PPR Repeat 288 318 1.2e-92 298.6 PPR repeat
XP_057796701.1 Pfam PF23276 TPR_24 Repeat 306 417 7.4e-39 133.4 Pentatricopeptide repeat-containing protein
XP_057796701.1 Pfam PF13812 PPR_3 Repeat 313 367 5.8e-65 216.0 Pentatricopeptide repeat domain
XP_057796701.1 Pfam PF12854 PPR_1 Repeat 316 349 2.5e-119 389.4 PPR repeat
XP_057796701.1 Pfam PF13041 PPR_2 Repeat 320 369 1.3e-156 509.3 PPR repeat family
XP_057796701.1 Pfam PF01535 PPR Repeat 323 353 1.2e-92 298.6 PPR repeat
XP_057796701.1 Pfam PF12854 PPR_1 Repeat 351 380 2.5e-119 389.4 PPR repeat
XP_057796701.1 Pfam PF13041 PPR_2 Repeat 355 402 1.3e-156 509.3 PPR repeat family
XP_057796701.1 Pfam PF01535 PPR Repeat 358 387 1.2e-92 298.6 PPR repeat
XP_057796701.1 Pfam PF12854 PPR_1 Repeat 386 418 2.5e-119 389.4 PPR repeat
XP_057796701.1 Pfam PF13041 PPR_2 Repeat 391 439 1.3e-156 509.3 PPR repeat family
XP_057796701.1 Pfam PF01535 PPR Repeat 394 421 1.2e-92 298.6 PPR repeat
XP_057796701.1 Pfam PF13812 PPR_3 Repeat 413 470 5.8e-65 216.0 Pentatricopeptide repeat domain
XP_057796701.1 Pfam PF12854 PPR_1 Repeat 423 451 2.5e-119 389.4 PPR repeat
XP_057796701.1 Pfam PF01535 PPR Repeat 428 458 1.2e-92 298.6 PPR repeat
XP_057796701.1 Pfam PF13041 PPR_2 Repeat 432 474 1.3e-156 509.3 PPR repeat family
XP_057796701.1 Pfam PF17177 PPR_long Repeat 453 573 1.2e-33 117.0 Pentacotripeptide-repeat region of PRORP
XP_057796701.1 Pfam PF12854 PPR_1 Repeat 456 487 2.5e-119 389.4 PPR repeat
XP_057796701.1 Pfam PF13041 PPR_2 Repeat 460 497 1.3e-156 509.3 PPR repeat family
XP_057796701.1 Pfam PF01535 PPR Repeat 463 493 1.2e-92 298.6 PPR repeat
XP_057796701.1 Pfam PF13812 PPR_3 Repeat 463 507 5.8e-65 216.0 Pentatricopeptide repeat domain
XP_057796701.1 Pfam PF23276 TPR_24 Repeat 468 577 7.4e-39 133.4 Pentatricopeptide repeat-containing protein
XP_057796701.1 Pfam PF12854 PPR_1 Repeat 491 524 2.5e-119 389.4 PPR repeat
XP_057796701.1 Pfam PF13041 PPR_2 Repeat 495 542 1.3e-156 509.3 PPR repeat family
XP_057796701.1 Pfam PF01535 PPR Repeat 499 528 1.2e-92 298.6 PPR repeat
XP_057796701.1 Pfam PF13812 PPR_3 Repeat 519 569 5.8e-65 216.0 Pentatricopeptide repeat domain
XP_057796701.1 Pfam PF01535 PPR Repeat 534 563 1.2e-92 298.6 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940718.1
CTAATAGAAAAAGTCGCCTTAATCCAAAATCGAAACTCCATTCGTTGCAATTTCATCCCTTTTTTCAGATTCAATCACAACTCCTAACCAAAAGAGAGAAAAAAAGATTCAAACTCACCGATTAAGGATGATGAACAGAAGAGCTGCTGTTTCTGCAATAAATCTGATTCATGGAAGGGGATTTCTCAATGGATGGTCGCATAAATCGGGTATTCTCTCTCCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTA...

CDS

1 records

下载 CDS FASTA
LOC131012725
ATGATGAACAGAAGAGCTGCTGTTTCTGCAATAAATCTGATTCATGGAAGGGGATTTCTCAATGGATGGTCGCATAAATCGGGTATTCTCTCTCCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGTTGTGTTAAAGAATTAAAGGATGCTATTGAATTGTTTCAAAAAATGAAGAGTATGCGGCGGGAGCCTTCTATTCGAATGTACAACAATCTTTTGAGTGTTACTGT...

Protein

1 records

下载 Protein FASTA
XP_057796701.1
MMNRRAAVSAINLIHGRGFLNGWSHKSGILSPPFSLFSSKAFQPKQPRIDFSCVKELKDAIELFQKMKSMRREPSIRMYNNLLSVTVKIEQYSFALYMFDEILRMGVPVDVYTMTIAVNCCCLLKDIKSGFAIMGIFFKRGYEPNVATFTTLIKGLFLDHKVVEAGKLFNKILRFGICEPNDVMILAMVDGLCKSGNVLPASDLVRRLERSRLRPDVKTYSALLDGLRKSGMVDDAFKLLSTMTEKGISPDVVTYNSMIQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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