当前解析结果
SmilChr02G000349| 统一新 Gene ID | SmilChr02G000349 |
|---|---|
| 名称 | SmilChr02G000349 |
| 描述 | probable membrane metalloprotease ARASP2, chloroplastic |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 4519587 - 4523128 / - |
| NCBI Gene ID | LOC131007871 |
|---|---|
| GeneID | 131007871 |
| locus_tag | - |
| NCBI Name | LOC131007871 |
| 原始查询 | SmilChr02G000349 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable membrane metalloprotease ARASP2, chloroplastic |
| 产物 | probable membrane metalloprotease ARASP2%2C chloroplastic |
| Arabidopsis | AT2G32480 (ARASP)chloroplastic membrane metallo proteases [Source:NCBI gene (formerly Entrezgene);Acc:817809] identity=69.5; qcov=0.831; evalue=0; confidence=high |
| Rice | Os03g0579000- identity=59.5; qcov=0.787; evalue=1.08e-153; confidence=high |
| GO | GO:0004222 (metalloendopeptidase activity); GO:0005515 (protein binding); GO:0006508 (proteolysis); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF00595 (PDZ); PF02163 (Peptidase_M50); PF13180 (PDZ_2); PF17820 (PDZ_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007871 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057790768.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057790768.1 |
| 3 | Chloroplast thylakoid membrane | 类囊体膜 | 1.00000 | XP_057790768.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.60000 | XP_057790768.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057790768.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:4520016 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr2:4520043 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,B30 |
Chr2:4520058 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,B9 |
Chr2:4520085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,B9 |
Chr2:4520148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B121,C37 |
Chr2:4520382 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B12,B30,B91 |
Chr2:4520675 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B138,B40,C9 |
Chr2:4520751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B64,B69,C87 |
Chr2:4520839 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B71 |
Chr2:4520839 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B71 |
Chr2:4521044 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C79 |
Chr2:4521044 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790768.1PF02163
Peptidase_M50 146-483 aa
PF13180
PDZ_2 258-336 aa
PF00595
PDZ 265-321 aa
PF17820
PDZ_6 270-325 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790768.1 |
Pfam | PF02163 |
Peptidase_M50 | Family | 146 | 483 | 1.1e-57 | 195.6 | Peptidase family M50 |
XP_057790768.1 |
Pfam | PF13180 |
PDZ_2 | Domain | 258 | 336 | 1.4e-07 | 32.4 | PDZ domain |
XP_057790768.1 |
Pfam | PF00595 |
PDZ | Domain | 265 | 321 | 3.1e-05 | 25.0 | PDZ domain |
XP_057790768.1 |
Pfam | PF17820 |
PDZ_6 | Domain | 270 | 325 | 6.3e-07 | 29.7 | PDZ domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。