Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000351`

染色体: Chr02 坐标: 4526416-4528548 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000351`
名称	SmilChr02G000351
描述	membrane metalloprotease ARASP, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	4526416 - 4528548 / `-`

ID 对照

NCBI Gene ID	`LOC131012740`
GeneID	`131012740`
locus_tag	`-`
NCBI Name	`LOC131012740`
原始查询	`SmilChr02G000351`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	membrane metalloprotease ARASP, chloroplastic-like
产物	membrane metalloprotease ARASP%2C chloroplastic-like
Arabidopsis	`AT2G32480` (ARASP) chloroplastic membrane metallo proteases [Source:NCBI gene (formerly Entrezgene);Acc:817809] identity=68; qcov=1.02; evalue=0; confidence=high
Rice	`Os03g0579000` - identity=59.2; qcov=0.898; evalue=1.58e-152; confidence=high
GO	GO:0004222 (metalloendopeptidase activity); GO:0005515 (protein binding); GO:0006508 (proteolysis); GO:0016020 (membrane)
KEGG	-
Pfam	PF00595 (PDZ); PF02163 (Peptidase_M50); PF13180 (PDZ_2); PF17820 (PDZ_6)
InterPro	-
eggNOG	-
NR	GeneID:131012740

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057796722.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057796722.1`
3	Chloroplast thylakoid	类囊体	1.00000	`XP_057796722.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.80000	`XP_057796722.1`
5	Nucleus	细胞核	0.00000	`XP_057796722.1`

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变，或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796722.1

454 aa

227

454

Peptidase_M50

PDZ_2

PDZ

PDZ_6

PF02163 Peptidase_M50 98-435 aa PF13180 PDZ_2 210-288 aa PF00595 PDZ 217-273 aa PF17820 PDZ_6 222-277 aa

XP_057796723.1

440 aa

220

440

Peptidase_M50

PDZ_2

PDZ

PDZ_6

PF02163 Peptidase_M50 84-421 aa PF13180 PDZ_2 196-274 aa PF00595 PDZ 203-259 aa PF17820 PDZ_6 208-263 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796722.1`	Pfam	`PF02163`	Peptidase_M50	Family	98	435	1.6e-57	195.1	Peptidase family M50
`XP_057796722.1`	Pfam	`PF13180`	PDZ_2	Domain	210	288	1.2e-07	32.6	PDZ domain
`XP_057796722.1`	Pfam	`PF00595`	PDZ	Domain	217	273	2.8e-05	25.1	PDZ domain
`XP_057796722.1`	Pfam	`PF17820`	PDZ_6	Domain	222	277	6.7e-07	29.6	PDZ domain
`XP_057796723.1`	Pfam	`PF02163`	Peptidase_M50	Family	84	421	1.5e-57	195.2	Peptidase family M50
`XP_057796723.1`	Pfam	`PF13180`	PDZ_2	Domain	196	274	1.1e-07	32.7	PDZ domain
`XP_057796723.1`	Pfam	`PF00595`	PDZ	Domain	203	259	2.6e-05	25.2	PDZ domain
`XP_057796723.1`	Pfam	`PF17820`	PDZ_6	Domain	208	263	6.4e-07	29.7	PDZ domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940739.1
AAAAACAAAAATAAAATAATAAAACATCATTGACTGAAGAACTTGTGGAAATGGATGATTCTCTTCACCTCCACAAACTCATAAATTCAAATTATCCATTCAAAATCTACTTAGCTCTCACCTCACACCAACAACAACAAAACTCAATGCCACCTCCATTAAACTTAACTCACTCTTCTTACCAATAATCCTCTCCACAATCATTCACAATGATTGCAACCCTCTCTTCATCTCCTCACCCACTGCCCAGATTCAGCACT...

XM_057940740.1
TGATTCTCTTCACCTCCACAAACTCATAAATTCAAATTATCCATTCAAAATCTACTTAGCTCTCACCTCACACCAACAACAACAAAACTCAATGCCACCTCCATTAAACTTAACTCACTCTTCTTACCAATAATCCTCTCCACAATCATTCACAATGATTGCAACCCTCTCTTCATCTCCTCACCCACTGCCCAGATTCAGCACTTCAAGAACACCCATCTCCGATTTCTCCCCCAATTCCAAAACCCATTTATCTTCTT...

CDS

2 records

下载 CDS FASTA

LOC131012740
ATGATTGCAACCCTCTCTTCATCTCCTCACCCACTGCCCAGATTCAGCACTTCAAGAACACCCATCTCCGATTTCTCCCCCAATTCCAAAACCCATTTATCTTCTTCACCATGTTCGATAATTTGCAGAGGAAGTCCGTTTCTCTTCAGGAGCAGAGGATTGAGGCATAATACGAGGAAAAAGTTTCAAACTTGCGCGATTGGCGGGCTCGATCTAGCTGGGTTCGAGAGCGCTCAATCAGTAATTGAAGCAGCCGCGGT...

LOC131012740
ATGATTGCAACCCTCTCTTCATCTCCTCACCCACTGCCCAGATTCAGCACTTCAAGAACACCCATCTCCGATTTCTCCCCCAATTCCAAAACCCATTTATCTTCTTCACCATGTTCGATAATTTGCAGAGGAAGTCCGTTTCTCTCTTCACCATGTTCGATAATTTGCAGAGGAAGTCCGTTTCTCTTCAGGAGCAGAGGATTGAGGCATAATACGAGGAAAAAGTTTCAAACTTGCGCGATTGGCGGGCTCGATCTAGC...

Protein

2 records

下载 Protein FASTA

XP_057796722.1
MIATLSSSPHPLPRFSTSRTPISDFSPNSKTHLSSSPCSIICRGSPFLSSPCSIICRGSPFLFRSRGLRHNTRKKFQTCAIGGLDLAGFESAQSVIEAAAVLTAIIVVHESGHFFAAYLQGIHVSKFAVGFGPILARFNSKNVEYSIRAFPLGGFVAFPDNDPDSEIPNDDVNLLKNRPIFDRVVVISAGVIANIVFAYVIIFAQVLFVGLPVQESFPGVLVPEVRPFSAASRDGLLPGDVILGVDDIELSRTGPSLVSE...

XP_057796723.1
MIATLSSSPHPLPRFSTSRTPISDFSPNSKTHLSSSPCSIICRGSPFLFRSRGLRHNTRKKFQTCAIGGLDLAGFESAQSVIEAAAVLTAIIVVHESGHFFAAYLQGIHVSKFAVGFGPILARFNSKNVEYSIRAFPLGGFVAFPDNDPDSEIPNDDVNLLKNRPIFDRVVVISAGVIANIVFAYVIIFAQVLFVGLPVQESFPGVLVPEVRPFSAASRDGLLPGDVILGVDDIELSRTGPSLVSEVVDAIRNSPKRKVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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