Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000364`

染色体: Chr02 坐标: 4659785-4667432 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000364`
名称	SmilChr02G000364
描述	transcriptional adapter ADA2-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	4659785 - 4667432 / `-`

ID 对照

NCBI Gene ID	`LOC131012726`
GeneID	`131012726`
locus_tag	`-`
NCBI Name	`LOC131012726`
原始查询	`SmilChr02G000364`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcriptional adapter ADA2-like
产物	transcriptional adapter ADA2-like
Arabidopsis	`AT4G16420` (ADA2B) ADA2 2B [Source:NCBI gene (formerly Entrezgene);Acc:827336] identity=50.3; qcov=1; evalue=4.75e-144; confidence=high
Rice	`Os03g0750800` (OsHXA701) - identity=56; qcov=0.991; evalue=5.88e-171; confidence=high
GO	GO:0003682 (chromatin binding); GO:0003713 (transcription coactivator activity); GO:0005634 (nucleus); GO:0006338 (chromatin remodeling); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0008270 (zinc ion binding); GO:0035066 (GO:0035066)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF00569 (ZZ); PF13921 (Myb_DNA-bind_6); PF22941 (TADA2A-like_3rd); PF25299 (ZZ_ADA2)
InterPro	-
eggNOG	-
NR	GeneID:131012726

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796702.1`
2	Nucleoplasm	核质	1.00000	`XP_057796704.1`
3	Chromosome	染色体	0.00000	`XP_057796702.1`
4	Centromere	着丝粒	0.00000	`XP_057796702.1`
5	Chromatin	染色质	0.00000	`XP_057796702.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:4660268`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,C35,C44
`Chr2:4660286`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,C35,C44
`Chr2:4660316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:4660333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:4660361`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B55,B8,C13,C23
`Chr2:4660768`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,C77
`Chr2:4660778`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,C77
`Chr2:4663527`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A18,B2,C28,C71
`Chr2:4664365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796702.1

577 aa

288

577

ZZ_ADA2

Myb_DNA-binding

Myb_DNA-bind_6

TADA2A-like_3rd

PF00569 ZZ 47-90 aa PF25299 ZZ_ADA2 51-97 aa PF00249 Myb_DNA-binding 108-150 aa PF13921 Myb_DNA-bind_6 109-151 aa PF22941 TADA2A-like_3rd 289-358 aa

XP_057796704.1

463 aa

232

463

Myb_DNA-binding

Myb_DNA-bind_6

TADA2A-like_3rd

PF00249 Myb_DNA-binding 2-36 aa PF13921 Myb_DNA-bind_6 2-37 aa PF22941 TADA2A-like_3rd 175-244 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796702.1`	Pfam	`PF00569`	ZZ	Domain	47	90	2.3e-10	40.8	Zinc finger, ZZ type
`XP_057796702.1`	Pfam	`PF25299`	ZZ_ADA2	Domain	51	97	2.2e-15	57.2	ADA2 ZZ-type zing finger
`XP_057796702.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	108	150	1.1e-12	48.6	Myb-like DNA-binding domain
`XP_057796702.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	109	151	4.5e-08	33.9	Myb-like DNA-binding domain
`XP_057796702.1`	Pfam	`PF22941`	TADA2A-like_3rd	Domain	289	358	3.4e-28	98.3	Transcriptional adapter 2-alpha-like domain
`XP_057796704.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	2	36	2.6e-09	37.8	Myb-like DNA-binding domain
`XP_057796704.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	2	37	8.7e-06	26.6	Myb-like DNA-binding domain
`XP_057796704.1`	Pfam	`PF22941`	TADA2A-like_3rd	Domain	175	244	2.6e-28	98.7	Transcriptional adapter 2-alpha-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940719.1
GAATTTCAACTACAAGAAAAATAATATAGAATCTATTTTTGGCTAACCCTTTTTTTTTTTTTTTTTTGTTTGGAGGAGCAACCCAAGTATTTAAAGAGTAAAATAAATAAAAGTGTGGGTATGAAAACAAAAACAAAAATAAAAAATAAAAATTTCAGGCTGTAAAAGAAATTACGAAAAGTTTAGGGGCCAGAAATTGAAATATAAGTTTGGGCAGCAGAGCGAAATTTAACGGATTGTTTTTGCCGCTTTAATTGAGT...

XM_057940721.1
TTTGTATTTTTGAGGTTGATGTTGCGATAACTTAGCATTTCCGCTTATATGTCCTGACTGGAATGCAGATGAGGAGATGTTACTTCTGGAGGGTATTGAAATGTATGGACTAGCAAACTGGAGCGAAGTGGCAGAACATGTTGGAACCAAGAGTAGATCACAATGCATTGAACACTACAACAGGGTATACATGAATTCCCCATGCTTCCCTCTTCCGGACATGTCCCATGTGATGGGGAAGAACAAAGAGGAACTCCTTG...

CDS

2 records

下载 CDS FASTA

LOC131012726
ATGGGACGTTCACGCGCCGCCTCTCAGGCCGCCGCCGATGACCCCGGCCAAAGTCGGTCAAAGAGAAAACGCACAACTCAAAATGTGGAGAATACGGATAGCGCACCCCCTGTTCCGGGAATAACTGATGGAAAGAAGGCTTTATACCATTGTAACTACTGCAACAAAGACATTTCGGGAAAGACTCGGATCAAGTGTGTAATATGTTCTGACTTCGACCTCTGTGTTGAATGCTTTTCTGTTGGCGCTGAGGTCCATCC...

LOC131012726
ATGTTACTTCTGGAGGGTATTGAAATGTATGGACTAGCAAACTGGAGCGAAGTGGCAGAACATGTTGGAACCAAGAGTAGATCACAATGCATTGAACACTACAACAGGGTATACATGAATTCCCCATGCTTCCCTCTTCCGGACATGTCCCATGTGATGGGGAAGAACAAAGAGGAACTCCTTGCTATGGCCAAAGGAAACGATGAAACTAAGAAAGGAGCCACTACGTCTGGCGAAGTTGATGGGAAAGAAGAGTCACC...

Protein

2 records

下载 Protein FASTA

XP_057796702.1
MGRSRAASQAAADDPGQSRSKRKRTTQNVENTDSAPPVPGITDGKKALYHCNYCNKDISGKTRIKCVICSDFDLCVECFSVGAEVHPHKSNHPYRVMDNLAFPLICPDWNADEEMLLLEGIEMYGLANWSEVAEHVGTKSRSQCIEHYNRVYMNSPCFPLPDMSHVMGKNKEELLAMAKGNDETKKGATTSGEVDGKEESPFSARIKMEDQKKEGQTGRSSSSISYEAGAIAGSSCAKMSTGAGKRTSEKALSKDGLNAP...

XP_057796704.1
MLLLEGIEMYGLANWSEVAEHVGTKSRSQCIEHYNRVYMNSPCFPLPDMSHVMGKNKEELLAMAKGNDETKKGATTSGEVDGKEESPFSARIKMEDQKKEGQTGRSSSSISYEAGAIAGSSCAKMSTGAGKRTSEKALSKDGLNAPKVEELHLDRSIGEKKPRTSENEGVSMKELSGYNSKRQEFEIEYDNDAEQLLADMEFKETDTDAERELKIRILHIYSKRLDERKRRKDFILERNLLYPDPFERDLTLEEKELCHR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器