Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000371`

染色体: Chr02 坐标: 4707394-4710580 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000371`
名称	SmilChr02G000371
描述	uncharacterized SmilChr02G000371
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	4707394 - 4710580 / `-`

ID 对照

NCBI Gene ID	`LOC131012758`
GeneID	`131012758`
locus_tag	`-`
NCBI Name	`LOC131012758`
原始查询	`SmilChr02G000371`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	cytoplasmic dynein 2 light intermediate chain [Source:NCBI gene (formerly Entrezgene);Acc:814973]; symbol=AT2G04340; hit=AT2G04340; species=arabidopsis; confidence=high
产物	cytoplasmic dynein 2 light intermediate chain [Source:NCBI gene (formerly Entrezgene);Acc:814973]; symbol=AT2G04340; hit=AT2G04340; species=arabidopsis; confidence=high
Arabidopsis	`AT2G04340` (AT2G04340) cytoplasmic dynein 2 light intermediate chain [Source:NCBI gene (formerly Entrezgene);Acc:814973] identity=59; qcov=0.965; evalue=3.62e-76; confidence=high
Rice	`Os09g0478400` - identity=57.7; qcov=0.715; evalue=2.21e-49; confidence=medium
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131012758

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057796746.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057796746.1`
3	Mitochondrion inner membrane	线粒体内膜	0.80000	`XP_057796747.1`
4	Nucleus	细胞核	0.00000	`XP_057796746.1`
5	Chromosome	染色体	0.00000	`XP_057796746.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:4708312`	`T`	`TAA`	2bp_insertion	frameshift_variant	104	A1,A11,A13,A14,A18,A19,A20,A22,A23,A3,A5,A6,A7,A9,B1,B10,B104,B109,B117,B118,B123,B124,B125,B126,B128,B129,B135,B137,B14,B140,B15,B17,B19,B2,B24,B25,B26,B28,B30,B31,B35,B38,B39,B4,B42,B46,B47,B49,B5,B50,B52,B56,B57,B58,B6,B60,B62,B64,B65,B68,B7,B72,B73,B79,B81,B82,B84,B88,B89,B90,B92,B96,B99,C1,C15,C19,C2,C21,C24,C3,C32,C35,C4,C43,C45,C5,C50,C51,C57,C62,C67,C68,C7,C71,C72,C73,C75,C76,C79,C80,C86,D3,D4,D6
`Chr2:4708402`	`CT`	`C`	1bp_deletion	frameshift_variant	108	A1,A11,A13,A14,A18,A20,A22,A23,A3,A5,A6,A7,A9,B1,B10,B104,B109,B113,B117,B118,B123,B124,B125,B126,B128,B129,B135,B137,B14,B140,B15,B17,B18,B19,B2,B24,B25,B26,B28,B30,B31,B35,B38,B39,B4,B42,B43,B46,B47,B49,B5,B50,B52,B56,B57,B58,B6,B60,B62,B63,B64,B65,B68,B7,B72,B73,B74,B79,B8,B81,B82,B84,B88,B90,B92,B96,B99,C1,C15,C19,C2,C21,C24,C3,C32,C35,C4,C43,C45,C5,C50,C51,C57,C62,C67,C68,C7,C71,C72,C73,C75,C76,C79,C80,C86,D3,D4,D6
`Chr2:4708439`	`AC`	`A`	1bp_deletion	frameshift_variant	117	A1,A10,A14,A18,A20,A21,A22,A24,A25,A4,A5,A7,B100,B101,B105,B106,B107,B108,B11,B110,B111,B119,B12,B120,B121,B126,B13,B131,B132,B133,B135,B14,B18,B2,B20,B22,B23,B26,B27,B29,B3,B32,B33,B34,B36,B38,B39,B4,B40,B48,B51,B53,B56,B58,B59,B63,B66,B67,B68,B7,B71,B76,B77,B78,B79,B81,B85,B87,B9,B91,B93,B94,B96,B98,B99,C10,C11,C13,C2,C20,C27,C31,C32,C34,C36,C37,C38,C39,C40,C42,C44,C45,C46,C52,C53,C55,C56,C58,C59,C6,C63,C65,C68,C69,C70,C76,C77,C78,C79,C85,C9,D1,D2,D3,D5,D8,D9
`Chr2:4708444`	`GA`	`G`	1bp_deletion	frameshift_variant	5	B107,B112,B16,B86,C25
`Chr2:4708444`	`GA`	`G`	1bp_deletion	CDS_variant	5	B107,B112,B16,B86,C25
`Chr2:4708492`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C48,D7
`Chr2:4708499`	`G`	`A`	EMS_canonical_SNV	stop_gained	121	A1,A11,A13,A14,A18,A20,A22,A23,A3,A5,A6,A7,A9,B1,B10,B104,B106,B109,B117,B118,B123,B124,B125,B126,B128,B129,B135,B137,B139,B14,B140,B15,B17,B18,B19,B2,B24,B25,B26,B27,B28,B30,B31,B32,B35,B36,B38,B39,B4,B41,B42,B43,B46,B47,B48,B49,B5,B50,B52,B56,B57,B6,B60,B62,B63,B64,B65,B68,B7,B72,B73,B74,B78,B79,B8,B81,B82,B84,B88,B89,B90,B92,B96,B99,C1,C15,C19,C2,C21,C24,C3,C32,C35,C4,C43,C45,C5,C50,C51,C56,C57,C58,C60,C62,C67,C68,C7,C71,C72,C73,C75,C76,C79,C80,C82,C83,C86,D11,D3,D4,D6
`Chr2:4708572`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B78,B89,C49,C60,C83
`Chr2:4708580`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B111,B77,C21
`Chr2:4709165`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B71,B93,C62
`Chr2:4709172`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B86,C25
`Chr2:4709289`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B71,C62

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057940769.1
GGGCGGGCTTAGCTGCATTTTTATGGCCCGAAACAATAATTTTTTTTCTTTTTTTTAATCGAAATGAAACAAACAGTTCTCTATCTGCCATCTCCTTTGCCATAGCCGTGATTCTCTCTCTGCGGCTGAAAATTTTGAAAGTGTTGGGAATGTGTGATTACGCAATTCTTGTTGGATAGGAGAAACAAATTTCTGAATTAAGTTCACAGTTTCCGATTTCTTGTACCAATTTCGCGGCAGCGGAAACAGCCATTTCACTA...

XM_057940770.1
GGGCGGGCTTAGCTGCATTTTTATGGCCCGAAACAATAATTTTTTTTCTTTTTTTTAATCGAAATGAAACAAACAGTTCTCTATCTGCCATCTCCTTTGCCATAGCCGTGATTCTCTCTCTGCGGCTGAAAATTTTGAAAGTGTTGGGAATGTGTGATTACGCAATTCTTGTTGGATAGGAGAAACAAATTTCTGAATTAAGTTCACAGTTTCCGATTTCTTGTACCAATTTCGCGGCAGCGGAAACAGCCATTTCACTA...

CDS

8 records

下载 CDS FASTA

LOC131012758
ATGCACGGAGTTCGTCAAACATTAAATCAGATGTCCAGGAAGTTTCATAAACTGGCTCGTGAAGGTCCAAGTGATACCTTGAAGAGGAAAGTTGCCGAATTAGAGAAGAAGAGAAAGAGAAGAAATCCCCATAAAGGTGACTTGTATGTGGATGTTCCTGAATCAAAATCCTGGCTTGATACAGCAACCATGCCATTGATACTCACTGCTGTAGGAACTGCCCTATTTGCGAAGATCCTGATGCTGCTGGATGAGGCAAA...

Protein

8 records

下载 Protein FASTA

XP_057796746.1
MHGVRQTLNQMSRKFHKLAREGPSDTLKRKVAELEKKRKRRNPHKGDLYVDVPESKSWLDTATMPLILTAVGTALFAKILMLLDEANAQERLEKKIKEAPEGQGTVRMLTREEWEKMREIRPRTPFESTIARPNAKIRTGEPLRTVNQARSCYLFVIYVFNQLQNSQFLHFTQVISWKKRSCKSSRSFAPNLALCCLVEQWDLSITIDIKTFCS

XP_057796747.1
MHGVRQTLNQMSRKFHKLAREGPSDTLKRKVAELEKKRKRRNPHKGDLYVDVPESKSWLDTATMPLILTAVGTALFAKILMLLDEANAQERLEKKIKEAPEGQGTVRMLTREEWEKMREIRPRTPFESTIARPNAKIRTGEPLRTEDLKDWSVDVFTNALTRAEETAKRGSI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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