Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000378`

染色体: Chr02 坐标: 4763958-4767482 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000378`
名称	SmilChr02G000378
描述	probable E3 ubiquitin-protein ligase XERICO
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	4763958 - 4767482 / `+`

ID 对照

NCBI Gene ID	`LOC131012762`
GeneID	`131012762`
locus_tag	`-`
NCBI Name	`LOC131012762`
原始查询	`SmilChr02G000378`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable E3 ubiquitin-protein ligase XERICO
产物	probable E3 ubiquitin-protein ligase XERICO
Arabidopsis	`AT2G04240` (XERICO) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814962] identity=45.5; qcov=1.01; evalue=2.96e-41; confidence=medium
Rice	`Os08g0492500` (OsRHP1) - identity=37.3; qcov=1.04; evalue=4.09e-25; confidence=medium
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF14634 (zf-RING_5); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131012762

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.60000	`XP_057796764.1`
2	Vacuole membrane	液泡膜	0.40000	`XP_057796764.1`
3	Cytoplasm	细胞质	0.20000	`XP_057796757.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057796757.1`
5	Golgi apparatus	高尔基体	0.20000	`XP_057796757.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:4766257`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:4766371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B77,C5,C50,C9
`Chr2:4766499`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr2:4766858`	`GTT`	`G`	2bp_deletion	frameshift_variant	3	A2,C42,C53
`Chr2:4766858`	`GTT`	`G`	2bp_deletion	CDS_variant	3	A2,C42,C53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796757.1

179 aa

179

zf-RING_2

zf-RING_11

zf-C3HC4_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

PF13639 zf-RING_2 94-138 aa PF17123 zf-RING_11 95-123 aa PF13923 zf-C3HC4_2 95-137 aa PF14634 zf-RING_5 95-138 aa PF13445 zf-RING_UBOX 96-135 aa PF00097 zf-C3HC4 96-137 aa

XP_057796758.1

179 aa

179

zf-RING_2

zf-RING_11

zf-C3HC4_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

PF13639 zf-RING_2 94-138 aa PF17123 zf-RING_11 95-123 aa PF13923 zf-C3HC4_2 95-137 aa PF14634 zf-RING_5 95-138 aa PF13445 zf-RING_UBOX 96-135 aa PF00097 zf-C3HC4 96-137 aa

XP_057796759.1

179 aa

179

zf-RING_2

zf-RING_11

zf-C3HC4_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

PF13639 zf-RING_2 94-138 aa PF17123 zf-RING_11 95-123 aa PF13923 zf-C3HC4_2 95-137 aa PF14634 zf-RING_5 95-138 aa PF13445 zf-RING_UBOX 96-135 aa PF00097 zf-C3HC4 96-137 aa

XP_057796760.1

179 aa

179

zf-RING_2

zf-RING_11

zf-C3HC4_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

PF13639 zf-RING_2 94-138 aa PF17123 zf-RING_11 95-123 aa PF13923 zf-C3HC4_2 95-137 aa PF14634 zf-RING_5 95-138 aa PF13445 zf-RING_UBOX 96-135 aa PF00097 zf-C3HC4 96-137 aa

XP_057796761.1

179 aa

179

zf-RING_2

zf-RING_11

zf-C3HC4_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

PF13639 zf-RING_2 94-138 aa PF17123 zf-RING_11 95-123 aa PF13923 zf-C3HC4_2 95-137 aa PF14634 zf-RING_5 95-138 aa PF13445 zf-RING_UBOX 96-135 aa PF00097 zf-C3HC4 96-137 aa

XP_057796763.1

179 aa

179

zf-RING_2

zf-RING_11

zf-C3HC4_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

PF13639 zf-RING_2 94-138 aa PF17123 zf-RING_11 95-123 aa PF13923 zf-C3HC4_2 95-137 aa PF14634 zf-RING_5 95-138 aa PF13445 zf-RING_UBOX 96-135 aa PF00097 zf-C3HC4 96-137 aa

XP_057796764.1

155 aa

155

zf-RING_2

zf-RING_11

zf-C3HC4_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

PF13639 zf-RING_2 94-138 aa PF17123 zf-RING_11 95-123 aa PF13923 zf-C3HC4_2 95-137 aa PF14634 zf-RING_5 95-138 aa PF13445 zf-RING_UBOX 96-135 aa PF00097 zf-C3HC4 96-137 aa

XP_057796765.1

155 aa

155

zf-RING_2

zf-RING_11

zf-C3HC4_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

PF13639 zf-RING_2 94-138 aa PF17123 zf-RING_11 95-123 aa PF13923 zf-C3HC4_2 95-137 aa PF14634 zf-RING_5 95-138 aa PF13445 zf-RING_UBOX 96-135 aa PF00097 zf-C3HC4 96-137 aa

XP_057796766.1

155 aa

155

zf-RING_2

zf-RING_11

zf-C3HC4_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

PF13639 zf-RING_2 94-138 aa PF17123 zf-RING_11 95-123 aa PF13923 zf-C3HC4_2 95-137 aa PF14634 zf-RING_5 95-138 aa PF13445 zf-RING_UBOX 96-135 aa PF00097 zf-C3HC4 96-137 aa

XP_057796767.1

155 aa

155

zf-RING_2

zf-RING_11

zf-C3HC4_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

PF13639 zf-RING_2 94-138 aa PF17123 zf-RING_11 95-123 aa PF13923 zf-C3HC4_2 95-137 aa PF14634 zf-RING_5 95-138 aa PF13445 zf-RING_UBOX 96-135 aa PF00097 zf-C3HC4 96-137 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796757.1`	Pfam	`PF13639`	zf-RING_2	Domain	94	138	4.8e-13	49.9	Ring finger domain
`XP_057796757.1`	Pfam	`PF17123`	zf-RING_11	Domain	95	123	1.1e-09	38.5	RING-like zinc finger
`XP_057796757.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	95	137	1.7e-07	31.6	Zinc finger, C3HC4 type (RING finger)
`XP_057796757.1`	Pfam	`PF14634`	zf-RING_5	Domain	95	138	1.4e-07	32.0	zinc-RING finger domain
`XP_057796757.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	96	135	3.9e-08	33.9	RING-type zinc-finger
`XP_057796757.1`	Pfam	`PF00097`	zf-C3HC4	Domain	96	137	1.3e-08	35.3	Zinc finger, C3HC4 type (RING finger)
`XP_057796758.1`	Pfam	`PF13639`	zf-RING_2	Domain	94	138	4.8e-13	49.9	Ring finger domain
`XP_057796758.1`	Pfam	`PF17123`	zf-RING_11	Domain	95	123	1.1e-09	38.5	RING-like zinc finger
`XP_057796758.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	95	137	1.7e-07	31.6	Zinc finger, C3HC4 type (RING finger)
`XP_057796758.1`	Pfam	`PF14634`	zf-RING_5	Domain	95	138	1.4e-07	32.0	zinc-RING finger domain
`XP_057796758.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	96	135	3.9e-08	33.9	RING-type zinc-finger
`XP_057796758.1`	Pfam	`PF00097`	zf-C3HC4	Domain	96	137	1.3e-08	35.3	Zinc finger, C3HC4 type (RING finger)
`XP_057796759.1`	Pfam	`PF13639`	zf-RING_2	Domain	94	138	4.8e-13	49.9	Ring finger domain
`XP_057796759.1`	Pfam	`PF17123`	zf-RING_11	Domain	95	123	1.1e-09	38.5	RING-like zinc finger
`XP_057796759.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	95	137	1.7e-07	31.6	Zinc finger, C3HC4 type (RING finger)
`XP_057796759.1`	Pfam	`PF14634`	zf-RING_5	Domain	95	138	1.4e-07	32.0	zinc-RING finger domain
`XP_057796759.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	96	135	3.9e-08	33.9	RING-type zinc-finger
`XP_057796759.1`	Pfam	`PF00097`	zf-C3HC4	Domain	96	137	1.3e-08	35.3	Zinc finger, C3HC4 type (RING finger)
`XP_057796760.1`	Pfam	`PF13639`	zf-RING_2	Domain	94	138	4.8e-13	49.9	Ring finger domain
`XP_057796760.1`	Pfam	`PF17123`	zf-RING_11	Domain	95	123	1.1e-09	38.5	RING-like zinc finger
`XP_057796760.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	95	137	1.7e-07	31.6	Zinc finger, C3HC4 type (RING finger)
`XP_057796760.1`	Pfam	`PF14634`	zf-RING_5	Domain	95	138	1.4e-07	32.0	zinc-RING finger domain
`XP_057796760.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	96	135	3.9e-08	33.9	RING-type zinc-finger
`XP_057796760.1`	Pfam	`PF00097`	zf-C3HC4	Domain	96	137	1.3e-08	35.3	Zinc finger, C3HC4 type (RING finger)
`XP_057796761.1`	Pfam	`PF13639`	zf-RING_2	Domain	94	138	4.8e-13	49.9	Ring finger domain
`XP_057796761.1`	Pfam	`PF17123`	zf-RING_11	Domain	95	123	1.1e-09	38.5	RING-like zinc finger
`XP_057796761.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	95	137	1.7e-07	31.6	Zinc finger, C3HC4 type (RING finger)
`XP_057796761.1`	Pfam	`PF14634`	zf-RING_5	Domain	95	138	1.4e-07	32.0	zinc-RING finger domain
`XP_057796761.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	96	135	3.9e-08	33.9	RING-type zinc-finger
`XP_057796761.1`	Pfam	`PF00097`	zf-C3HC4	Domain	96	137	1.3e-08	35.3	Zinc finger, C3HC4 type (RING finger)
`XP_057796763.1`	Pfam	`PF13639`	zf-RING_2	Domain	94	138	4.8e-13	49.9	Ring finger domain
`XP_057796763.1`	Pfam	`PF17123`	zf-RING_11	Domain	95	123	1.1e-09	38.5	RING-like zinc finger
`XP_057796763.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	95	137	1.7e-07	31.6	Zinc finger, C3HC4 type (RING finger)
`XP_057796763.1`	Pfam	`PF14634`	zf-RING_5	Domain	95	138	1.4e-07	32.0	zinc-RING finger domain
`XP_057796763.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	96	135	3.9e-08	33.9	RING-type zinc-finger
`XP_057796763.1`	Pfam	`PF00097`	zf-C3HC4	Domain	96	137	1.3e-08	35.3	Zinc finger, C3HC4 type (RING finger)
`XP_057796764.1`	Pfam	`PF13639`	zf-RING_2	Domain	94	138	3.7e-13	50.2	Ring finger domain
`XP_057796764.1`	Pfam	`PF17123`	zf-RING_11	Domain	95	123	9.2e-10	38.8	RING-like zinc finger
`XP_057796764.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	95	137	1.3e-07	32.0	Zinc finger, C3HC4 type (RING finger)
`XP_057796764.1`	Pfam	`PF14634`	zf-RING_5	Domain	95	138	1.1e-07	32.4	zinc-RING finger domain
`XP_057796764.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	96	135	3.1e-08	34.2	RING-type zinc-finger
`XP_057796764.1`	Pfam	`PF00097`	zf-C3HC4	Domain	96	137	5.2e-09	36.5	Zinc finger, C3HC4 type (RING finger)
`XP_057796765.1`	Pfam	`PF13639`	zf-RING_2	Domain	94	138	3.7e-13	50.2	Ring finger domain
`XP_057796765.1`	Pfam	`PF17123`	zf-RING_11	Domain	95	123	9.2e-10	38.8	RING-like zinc finger
`XP_057796765.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	95	137	1.3e-07	32.0	Zinc finger, C3HC4 type (RING finger)
`XP_057796765.1`	Pfam	`PF14634`	zf-RING_5	Domain	95	138	1.1e-07	32.4	zinc-RING finger domain
`XP_057796765.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	96	135	3.1e-08	34.2	RING-type zinc-finger
`XP_057796765.1`	Pfam	`PF00097`	zf-C3HC4	Domain	96	137	5.2e-09	36.5	Zinc finger, C3HC4 type (RING finger)
`XP_057796766.1`	Pfam	`PF13639`	zf-RING_2	Domain	94	138	3.7e-13	50.2	Ring finger domain
`XP_057796766.1`	Pfam	`PF17123`	zf-RING_11	Domain	95	123	9.2e-10	38.8	RING-like zinc finger
`XP_057796766.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	95	137	1.3e-07	32.0	Zinc finger, C3HC4 type (RING finger)
`XP_057796766.1`	Pfam	`PF14634`	zf-RING_5	Domain	95	138	1.1e-07	32.4	zinc-RING finger domain
`XP_057796766.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	96	135	3.1e-08	34.2	RING-type zinc-finger
`XP_057796766.1`	Pfam	`PF00097`	zf-C3HC4	Domain	96	137	5.2e-09	36.5	Zinc finger, C3HC4 type (RING finger)
`XP_057796767.1`	Pfam	`PF13639`	zf-RING_2	Domain	94	138	3.7e-13	50.2	Ring finger domain
`XP_057796767.1`	Pfam	`PF17123`	zf-RING_11	Domain	95	123	9.2e-10	38.8	RING-like zinc finger
`XP_057796767.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	95	137	1.3e-07	32.0	Zinc finger, C3HC4 type (RING finger)
`XP_057796767.1`	Pfam	`PF14634`	zf-RING_5	Domain	95	138	1.1e-07	32.4	zinc-RING finger domain
`XP_057796767.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	96	135	3.1e-08	34.2	RING-type zinc-finger
`XP_057796767.1`	Pfam	`PF00097`	zf-C3HC4	Domain	96	137	5.2e-09	36.5	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA

XM_057940778.1
CTTCACGTGCTGCGTCGAAAGCGACAAATTTAACGGTTATACTGAAAGCGTGCTTTAGAATAGCGGCTACGGATTTCCCTCGTCATAAAAAAAAATCGAAAAAAGAAAAAGAAAAAGGGTACAAAAATGTGCAGTAAGTACCAACTCATAGTAAGAAGCAATTTGCCTTGGTAGAATTGGTTGATTCAACTACTTCACTGTTAAAAAAATGGCGATTTCATCGTATCCAATCGGAGCTGATGCCGGAGTTCTGTGCATAA...

XM_057940781.1
TTCTTTTTTTACAAGAACGTGTTTAAAGAGAGGATTTTTTTTTACATGAGCATGTTTAAAGATTAGATTTTTAACATGAACACGTTTAAAGATTGGATTTTTACATGCGTGTTTTATGTCGGTGGAGATGTTTGAAACAACAAGAATAACTAATTCTGTAGCAGAAGGCTAACAAATAGTAAAACGTCACATGGGAGAGAGAGAGAGAGGCAATAATTGTAGTTGGCTTTATGCGAACTAAAGAGTTAAAACTCTTTCAA...

CDS

10 records

下载 CDS FASTA

LOC131012762
ATGGCGATTTCATCGTATCCAATCGGAGCTGATGCCGGAGTTCTGTGCATAATTCTGGCCAACACGGCGATATCCATATCCATCGTGAAGGAGATTGTTCGTTCGATACTGCACGTGATGGGCATTCGGATTGCCTCGTGGGAGGAGCTCTCTGCAGACCCATCGGCCTCAGGTGAGTACCGTAAAGGTCTCCCTGAATCGTACATGGAGGAGTTCCGGAGCCAGATTCCTGCGATGAGGTTCGACTCACTGTCTATGCA...

Protein

10 records

下载 Protein FASTA

XP_057796757.1
MAISSYPIGADAGVLCIILANTAISISIVKEIVRSILHVMGIRIASWEELSADPSASGEYRKGLPESYMEEFRSQIPAMRFDSLSMHEHDYPGQECSICLSEFEPNAAVNHLTCGHVFHNLCLEKWLNYWNTTCPLCRNSMMPQDVEDDDTCPMILECKKKSKKQYGCLCIKSVLMSCR

XP_057796758.1
MAISSYPIGADAGVLCIILANTAISISIVKEIVRSILHVMGIRIASWEELSADPSASGEYRKGLPESYMEEFRSQIPAMRFDSLSMHEHDYPGQECSICLSEFEPNAAVNHLTCGHVFHNLCLEKWLNYWNTTCPLCRNSMMPQDVEDDDTCPMILECKKKSKKQYGCLCIKSVLMSCR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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