Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000387`

染色体: Chr02 坐标: 4808100-4810743 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000387`
名称	SmilChr02G000387
描述	reticulon-like protein B8
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	4808100 - 4810743 / `+`

ID 对照

NCBI Gene ID	`LOC131012753`
GeneID	`131012753`
locus_tag	`-`
NCBI Name	`LOC131012753`
原始查询	`SmilChr02G000387`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	reticulon-like protein B8
产物	reticulon-like protein B8
Arabidopsis	`AT3G10260` (AT3G10260) Reticulon family protein [Source:NCBI gene (formerly Entrezgene);Acc:820188] identity=55.3; qcov=0.963; evalue=5.51e-96; confidence=high
Rice	`Os03g0781700` - identity=56; qcov=0.951; evalue=1.65e-94; confidence=high
GO	-
KEGG	-
Pfam	PF02453 (Reticulon)
InterPro	-
eggNOG	-
NR	GeneID:131012753

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057796740.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057796740.1`
3	Nucleus	细胞核	0.00000	`XP_057796740.1`
4	Chromosome	染色体	0.00000	`XP_057796740.1`
5	Centromere	着丝粒	0.00000	`XP_057796740.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:4809027`	`TAG`	`T`	2bp_deletion	frameshift_variant	63	A14,A18,A5,B100,B105,B106,B107,B11,B110,B111,B12,B120,B124,B126,B128,B129,B131,B133,B20,B21,B3,B41,B48,B5,B50,B51,B53,B55,B57,B62,B67,B7,B70,B72,B85,B88,B93,B97,C1,C13,C2,C23,C26,C31,C32,C34,C4,C40,C45,C51,C6,C60,C64,C65,C66,C68,C70,C77,C79,D1,D2,D5,D9
`Chr2:4809810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr2:4809907`	`A`	`AT`	1bp_insertion	frameshift_variant	2	A21,B76
`Chr2:4809907`	`A`	`AT`	1bp_insertion	CDS_variant	2	A21,B76
`Chr2:4810014`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B112
`Chr2:4810014`	`GC`	`G`	1bp_deletion	CDS_variant	1	B112
`Chr2:4810026`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:4810440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B32,C44,C81
`Chr2:4810483`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B102,B32
`Chr2:4810508`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B72,C72
`Chr2:4810518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B44,B68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796740.1

263 aa

132

263

Reticulon

PF02453 Reticulon 75-227 aa

XP_057796741.1

246 aa

123

246

Reticulon

PF02453 Reticulon 58-210 aa

XP_057796742.1

246 aa

123

246

Reticulon

PF02453 Reticulon 58-210 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796740.1`	Pfam	`PF02453`	Reticulon	Family	75	227	1.6e-51	175.0	Reticulon
`XP_057796741.1`	Pfam	`PF02453`	Reticulon	Family	58	210	9.3e-52	175.8	Reticulon
`XP_057796742.1`	Pfam	`PF02453`	Reticulon	Family	58	210	9.3e-52	175.8	Reticulon

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057940758.1
TTATAAATCTCACATTTCCCCAAGAAAGTAGTTTGTCTTAAAAAGCCATATAAAAAAGGGGACGCCTTTTATCTTCCATATATTATTCAATTTATTCTATTTGTAACCTCCATTTTCCACAGAAAGGAACTGAAATAGCTCAAGTTGGAAAAAATGTCGGAGGGGCTCGTACACAACATCATGGATGCAATTTCTGATAATGTATCAAAACACAAGAAAGTTTCATTCTCTGAGGATGACGACTCGAGCTCCGTCTCTTG...

XM_057940757.1
GATTCTTGCTTGTAAATTTTGTTCCATTTTCTGCTCGCATCTTTTTAGCTTCTGGGCTTCTCTCTAGTTTGCTATTTTTGAAGTTGGAGATTATTTTCTTGTCATTTCCCAGTTTGAACAAAAAAAAAAAAAAAAGATTTTGGTAGAACTCATTTTCGCCTAAATATGTGATGTTATGTGGTAGATGTTATGGGTTAGGTTAAAGTTCCAATTTTTATTTCTGGGTTTGGAGATAGGAGCTATCTGCAGGTTTTGTGAAT...

CDS

3 records

下载 CDS FASTA

LOC131012753
ATGATTAGAGAGAGACTATTGAAGAGAGGTGAAATTGAAAGGTTGGAAAAAATGTCGGAGGGGCTCGTACACAACATCATGGATGCAATTTCTGATAATGTATCAAAACACAAGAAAGTTTCATTCTCTGAGGATGACGACTCGAGCTCCGTCTCTTGTCAGGTGAAGAAACTGTTTGGGCGTGAGAAGCCCGTTCACCATATTCTTGGTGGTGGCAAATCTGCTGATGTCCTACTATGGAGGAACAAGAAGATCTCGGC...

LOC131012753
ATGTCGGAGGGGCTCGTACACAACATCATGGATGCAATTTCTGATAATGTATCAAAACACAAGAAAGTTTCATTCTCTGAGGATGACGACTCGAGCTCCGTCTCTTGTCAGGTGAAGAAACTGTTTGGGCGTGAGAAGCCCGTTCACCATATTCTTGGTGGTGGCAAATCTGCTGATGTCCTACTATGGAGGAACAAGAAGATCTCGGCTGGCGTCTTAGGTGGTGCCACCGTTGTCTGGGTGCTCTTTGAGTGGCTCAA...

Protein

3 records

下载 Protein FASTA

XP_057796740.1
MIRERLLKRGEIERLEKMSEGLVHNIMDAISDNVSKHKKVSFSEDDDSSSVSCQVKKLFGREKPVHHILGGGKSADVLLWRNKKISAGVLGGATVVWVLFEWLNYNFLSLSCFALIIALLLQFLWTNASSILNRSSSSAPRVVLPEEVFVNIGKMVGTEVNRSLIYLQDVACEGTIKQFVVVVGSLLAAAIIGSWCNFLTVIYIGFIAAHTLPVLYEKYDDQIDNFILSALGQVQHNYGKLDAGVLKRIPRAGSFKNWGR...

XP_057796741.1
MSEGLVHNIMDAISDNVSKHKKVSFSEDDDSSSVSCQVKKLFGREKPVHHILGGGKSADVLLWRNKKISAGVLGGATVVWVLFEWLNYNFLSLSCFALIIALLLQFLWTNASSILNRSSSSAPRVVLPEEVFVNIGKMVGTEVNRSLIYLQDVACEGTIKQFVVVVGSLLAAAIIGSWCNFLTVIYIGFIAAHTLPVLYEKYDDQIDNFILSALGQVQHNYGKLDAGVLKRIPRAGSFKNWGRKTD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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