Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000393

染色体: Chr02 坐标: 4872861-4879280 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000393
名称SmilChr02G000393
描述heat shock 70 kDa protein 17-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向4872861 - 4879280 / +

ID 对照

NCBI Gene IDLOC131012712
GeneID131012712
locus_tag-
NCBI NameLOC131012712
原始查询SmilChr02G000393

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述heat shock 70 kDa protein 17-like
产物heat shock 70 kDa protein 17-like
ArabidopsisAT4G16660 (AT4G16660)
heat shock protein 70 (Hsp 70) family protein [Source:NCBI gene (formerly Entrezgene);Acc:827367]
identity=66.8; qcov=0.952; evalue=0; confidence=high
RiceOs02g0710900
-
identity=64.8; qcov=0.992; evalue=0; confidence=high
GOGO:0005524 (ATP binding); GO:0030968 (endoplasmic reticulum unfolded protein response); GO:0034663 (endoplasmic reticulum chaperone complex); GO:0071456 (cellular response to hypoxia); GO:0140662 (ATP-dependent protein folding chaperone); GO:1903298 (negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway)
KEGGsmil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
PfamPF00012 (HSP70)
InterPro-
eggNOG-
NRGeneID:131012712

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 0.80000 XP_057796685.1
2 Endoplasmic reticulum lumen 内质网腔 0.40000 XP_057796685.1
3 Golgi apparatus 高尔基体 0.20000 XP_057796685.1
4 Nucleus 细胞核 0.00000 XP_057796685.1
5 Chromosome 染色体 0.00000 XP_057796685.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:4873042 C T EMS_canonical_SNV CDS_variant 1 B59
Chr2:4873190 C T EMS_canonical_SNV CDS_variant 1 C67
Chr2:4873235 C T EMS_canonical_SNV CDS_variant 4 B45,B95,C3,C7
Chr2:4873541 C T EMS_canonical_SNV CDS_variant 2 B136,C72
Chr2:4873778 G A EMS_canonical_SNV CDS_variant 1 B130
Chr2:4874487 G A EMS_canonical_SNV CDS_variant 1 B78
Chr2:4874526 G A EMS_canonical_SNV CDS_variant 2 B10,C35
Chr2:4874552 C T EMS_canonical_SNV CDS_variant 3 B40,B66,C78
Chr2:4874553 G A EMS_canonical_SNV CDS_variant 2 B35,C39
Chr2:4874638 C T EMS_canonical_SNV CDS_variant 1 B37
Chr2:4874705 G A EMS_canonical_SNV CDS_variant 1 B104
Chr2:4874933 G A EMS_canonical_SNV CDS_variant 1 B30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057796685.1
892 aa
N
1
446
892
HSP70
C
PF00012 HSP70 29-738 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796685.1 Pfam PF00012 HSP70 Family 29 738 1.2e-90 305.2 Hsp70 protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940702.1
CCATTCACAACACATCCGGCAACTCACATCCTGCCACGTGTTCTTTACTCCACGTGTAATATTCTGATTGGTTCACAGATCCTGCTCTTTCCACGTGGACGCTCTCCCCTACAAAAACCCATTCCCCACAACTCCCCAATTTGATGCAACGGTGGTGAGCTCGAAACTTCCACAAAAATGGCGACGCCGAGTTCACTGCACGCGCTGCTCTTCCTCTCGCTCTTCCTGCTGCATTCGTTTCAAACCGAATCGGCGGTGGC...

CDS

1 records

下载 CDS FASTA
LOC131012712
ATGGCGACGCCGAGTTCACTGCACGCGCTGCTCTTCCTCTCGCTCTTCCTGCTGCATTCGTTTCAAACCGAATCGGCGGTGGCCAGCATAGATCTCGGCTCGGAATGGCTCAAAGTCGCCGTAGTCAACCTCAAGCCCGGCCAGGCGCCGATCTCCGTCGCCATCAACGAGATGTCGAAGCGGAAGACGCCGACGCTCATCAGTTTCCACGCTGACTCCCGCTTGATCGGCGAGGAGTCGGCTAATCTCCTCGCGCGCTA...

Protein

1 records

下载 Protein FASTA
XP_057796685.1
MATPSSLHALLFLSLFLLHSFQTESAVASIDLGSEWLKVAVVNLKPGQAPISVAINEMSKRKTPTLISFHADSRLIGEESANLLARYPTKVFSHLPSLVAKPYNFTRDFLRKLYLSYEIAPEDTRGVAVFKAEVGDGGHFTAEEMVGMVLKYAAGLAETHARTSVKDVVITVPPFTGVAERRGLLAAADLAGLNVLALVNEHSGAALQYGIDKDFSNGSRHVVFYDMGASSTYAALVYFSAYNAKELGKTVSVNQFQVKD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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