当前解析结果
SmilChr02G000444| 统一新 Gene ID | SmilChr02G000444 |
|---|---|
| 名称 | SmilChr02G000444 |
| 描述 | V-type proton ATPase 16 kDa proteolipid subunit-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 5816373 - 5817119 / - |
| NCBI Gene ID | LOC131012820 |
|---|---|
| GeneID | 131012820 |
| locus_tag | - |
| NCBI Name | LOC131012820 |
| 原始查询 | SmilChr02G000444 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | V-type proton ATPase 16 kDa proteolipid subunit-like |
| 产物 | V-type proton ATPase 16 kDa proteolipid subunit-like |
| Arabidopsis | AT1G19910 (AVA-P2)ATPase, F0/V0 complex, subunit C protein [Source:NCBI gene (formerly Entrezgene);Acc:838579] identity=78.8; qcov=0.69; evalue=5.27e-57; confidence=high |
| Rice | Os12g0168900- identity=78; qcov=0.69; evalue=1.38e-55; confidence=high |
| GO | GO:0033179 (proton-transporting V-type ATPase, V0 domain); GO:0046961 (proton-transporting ATPase activity, rotational mechanism); GO:1902600 (proton transmembrane transport) |
| KEGG | smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00137 (ATP-synt_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012820 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast thylakoid | 类囊体 | 0.60000 | XP_057796797.1 |
| 2 | Chloroplast | 叶绿体 | 0.40000 | XP_057796797.1 |
| 3 | Vacuole | 液泡 | 0.40000 | XP_057796797.1 |
| 4 | Chloroplast thylakoid membrane | 类囊体膜 | 0.20000 | XP_057796797.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057796797.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:5816521 |
ACC |
A |
2bp_deletion | frameshift_variant | 14 | B100,B104,B16,C27,C31,C35,C37,C44,C50,C53,C56,C64,C81,C83 |
Chr2:5816534 |
T |
TCC |
2bp_insertion | frameshift_variant | 101 | A10,A11,A14,A16,A21,A3,A4,A5,A9,B100,B103,B104,B107,B108,B109,B115,B118,B119,B125,B126,B127,B132,B133,B136,B137,B139,B16,B20,B22,B29,B33,B34,B37,B40,B44,B45,B46,B52,B54,B55,B56,B57,B62,B63,B66,B67,B68,B69,B7,B70,B71,B72,B77,B8,B80,B83,B86,B87,B89,B94,B95,B96,C13,C19,C2,C22,C24,C25,C27,C29,C31,C33,C35,C37,C4,C40,C44,C45,C49,C50,C53,C55,C56,C58,C6,C60,C61,C62,C64,C70,C73,C75,C81,C83,C85,D10,D2,D3,D5,D7,D8 |
Chr2:5816628 |
A |
AC |
1bp_insertion | frameshift_variant | 76 | A1,A10,A11,A16,A21,A3,A4,B103,B107,B108,B109,B115,B119,B126,B127,B136,B137,B139,B20,B22,B33,B34,B40,B44,B45,B50,B52,B54,B55,B56,B57,B62,B63,B68,B69,B7,B70,B71,B72,B77,B8,B80,B83,B86,B87,B89,B9,B94,B95,B96,C13,C19,C2,C22,C24,C25,C28,C33,C34,C4,C40,C45,C49,C53,C55,C58,C61,C62,C73,C85,D10,D2,D3,D5,D7,D8 |
Chr2:5816820 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr2:5816878 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B128,D11 |
Chr2:5816923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B45 |
Chr2:5816958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B128,D11 |
Chr2:5816961 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B128,B136,D11 |
Chr2:5816998 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B46,C16,C37,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796797.1PF00137
ATP-synt_C 19-73 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796797.1 |
Pfam | PF00137 |
ATP-synt_C | Domain | 19 | 73 | 4.3e-07 | 30.8 | ATP synthase subunit C |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。