Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000455`

染色体: Chr02 坐标: 6086635-6093438 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000455`
名称	SmilChr02G000455
描述	uncharacterized SmilChr02G000455
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	6086635 - 6093438 / `-`

ID 对照

NCBI Gene ID	`LOC131012830`
GeneID	`131012830`
locus_tag	`-`
NCBI Name	`LOC131012830`
原始查询	`SmilChr02G000455`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817298]; symbol=AT2G27520; hit=AT2G27520; species=arabidopsis; confidence=low
产物	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817298]; symbol=AT2G27520; hit=AT2G27520; species=arabidopsis; confidence=low
Arabidopsis	`AT2G27520` (AT2G27520) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817298] identity=29.8; qcov=0.353; evalue=2.9e-09; confidence=low
Rice	`Os02g0199500` (OsFbox071) - identity=26.1; qcov=0.346; evalue=5.2e-07; confidence=low
GO	-
KEGG	-
Pfam	PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:131012830

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057796800.1`
2	Nucleus	细胞核	0.80000	`XP_057796804.1`
3	Cytosol	细胞质基质	0.20000	`XP_057796801.1`
4	Chromosome	染色体	0.00000	`XP_057796800.1`
5	Centromere	着丝粒	0.00000	`XP_057796800.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:6087283`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B41,B72
`Chr2:6087283`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B41,B72
`Chr2:6087284`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr2:6087321`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C1,C68
`Chr2:6091213`	`G`	`A`	EMS_canonical_SNV	stop_gained	33	A23,A6,B1,B115,B117,B122,B127,B128,B139,B14,B27,B28,B39,B4,B41,B51,B55,B58,B67,B74,B81,B86,B88,C12,C13,C16,C21,C23,C44,C52,C63,C81,D6
`Chr2:6091700`	`CAT`	`C`	2bp_deletion	frameshift_variant	2	B135,B15
`Chr2:6091700`	`CAT`	`C`	2bp_deletion	CDS_variant	2	B135,B15
`Chr2:6091706`	`CAT`	`*`	2bp_deletion	CDS_variant	3	B103,B135,B15
`Chr2:6091712`	`CAT`	`*`	2bp_deletion	CDS_variant	4	B103,B135,B15,B91
`Chr2:6092646`	`AAG`	`A`	2bp_deletion	frameshift_variant	9	B100,B118,B28,B49,B75,B87,C51,D5,D8
`Chr2:6092785`	`AT`	`A`	1bp_deletion	frameshift_variant	10	A6,B108,B127,B14,B64,B83,C13,C16,C45,C77
`Chr2:6092845`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B132,B26,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796800.1

605 aa

302

605

FBA_3

FBA_1

PF08268 FBA_3 39-186 aa PF07734 FBA_1 54-187 aa

XP_057796801.1

603 aa

302

603

FBA_3

FBA_1

PF08268 FBA_3 39-186 aa PF07734 FBA_1 54-187 aa

XP_057796802.1

566 aa

283

566

FBA_3

FBA_1

PF08268 FBA_3 12-147 aa PF07734 FBA_1 15-148 aa

XP_057796803.1

564 aa

282

564

FBA_3

FBA_1

PF08268 FBA_3 12-147 aa PF07734 FBA_1 15-148 aa

XP_057796804.1

399 aa

200

399

FBA_3

FBA_1

PF08268 FBA_3 12-147 aa PF07734 FBA_1 15-148 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796800.1`	Pfam	`PF08268`	FBA_3	Repeat	39	186	5.3e-10	39.5	F-box associated beta propeller domain
`XP_057796800.1`	Pfam	`PF07734`	FBA_1	Repeat	54	187	1.7e-16	60.9	F-box associated beta propeller domain
`XP_057796801.1`	Pfam	`PF08268`	FBA_3	Repeat	39	186	5.3e-10	39.5	F-box associated beta propeller domain
`XP_057796801.1`	Pfam	`PF07734`	FBA_1	Repeat	54	187	1.7e-16	60.9	F-box associated beta propeller domain
`XP_057796802.1`	Pfam	`PF08268`	FBA_3	Repeat	12	147	1.6e-09	38.0	F-box associated beta propeller domain
`XP_057796802.1`	Pfam	`PF07734`	FBA_1	Repeat	15	148	2.1e-16	60.6	F-box associated beta propeller domain
`XP_057796803.1`	Pfam	`PF08268`	FBA_3	Repeat	12	147	1.6e-09	38.0	F-box associated beta propeller domain
`XP_057796803.1`	Pfam	`PF07734`	FBA_1	Repeat	15	148	2e-16	60.6	F-box associated beta propeller domain
`XP_057796804.1`	Pfam	`PF08268`	FBA_3	Repeat	12	147	7.8e-10	39.0	F-box associated beta propeller domain
`XP_057796804.1`	Pfam	`PF07734`	FBA_1	Repeat	15	148	1e-16	61.6	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057940821.1
TACTACTATATGACTGCGTTAGGGTTTCAATCTATTTTTTGTTCTACATCTGTTCTGTCCACTACGAACACGATGAGTAATTCCGAGCAGAAACGGTTTAATGCGAAATTTCACCTTGGCAAGTCCGCCAGCTTTTGGTAACAGTTGTAGGGGTTTGTTGGTTATGGGCGATGCTTTTGGCCATATTTTTCTTTGCAACCCCACAACCAAACAGTTTCAATTTATTCCTCCCACAGAAGATATAACTTATTTTAGCATCC...

XM_057940820.1
TACTACTATATGACTGCGTTAGGGTTTCAATCTATTTTTTGTTCTACATCTGTTCTGTCCACTACGAACACGATGAGTAATTCCGAGCAGAAACGGTTTAATGCGAAATTTCACCTTGGCAAGTCCGCCAGCTTTTGGTAACAGTTGTAGGGGTTTGTTGGTTATGGGCGATGCTTTTGGCCATATTTTTCTTTGCAACCCCACAACCAAACAGTTTCAATTTATTCCTCCCACAGAAGATATAACTTATTTTAGCATCC...

CDS

5 records

下载 CDS FASTA

LOC131012830
ATGAGTAATTCCGAGCAGAAACGGTTTAATGCGAAATTTCACCTTGGCAAGTCCGGTATGTATCATTTATCTGCTTTTTCTCCGCCAGATTTTTCTGAAATCCCTGAAGATAGTTTCGACCTTCCTTTTTTGAATCCATGGCAGCCAGCTTTTGGTAACAGTTGTAGGGGTTTGTTGGTTATGGGCGATGCTTTTGGCCATATTTTTCTTTGCAACCCCACAACCAAACAGTTTCAATTTATTCCTCCCACAGAAGATAT...

Protein

5 records

下载 Protein FASTA

XP_057796800.1
MSNSEQKRFNAKFHLGKSGMYHLSAFSPPDFSEIPEDSFDLPFLNPWQPAFGNSCRGLLVMGDAFGHIFLCNPTTKQFQFIPPTEDITYFSIQQLSLGYDSKSGDYKLLRVTIRMREPDGTNRTKTELYSVKNDSWKTIPNCDCFLYGRGEYVDDRCYWLDLYGSKVISFDFSEESFSYLPVPREPPEPEDRLDKFLLFKLDNEDSVGLILVWPRSGGIYSCGKRIGGDYYQFWVWRDGSWCLHKNVVLSGCYDISDMID...

XP_057796801.1
MSNSEQKRFNAKFHLGKSGMYHLSAFSPPDFSEIPEDSFDLPFLNPWQPAFGNSCRGLLVMGDAFGHIFLCNPTTKQFQFIPPTEDITYFSIQQLSLGYDSKSGDYKLLRVTIRMREPDGTNRTKTELYSVKNDSWKTIPNCDCFLYGRGEYVDDRCYWLDLYGSKVISFDFSEESFSYLPVPREPPEPEDRLDKFLLFKLDNEDSVGLILVWPRSGGIYSCGKRIGGDYYQFWVWRDGSWCLHKNVVLSGCYDISDMID...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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