Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000463`

染色体: Chr02 坐标: 6211368-6216909 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000463`
名称	SmilChr02G000463
描述	uncharacterized SmilChr02G000463
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	6211368 - 6216909 / `-`

ID 对照

NCBI Gene ID	`LOC131012837`
GeneID	`131012837`
locus_tag	`-`
NCBI Name	`LOC131012837`
原始查询	`SmilChr02G000463`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820738]; symbol=AT3G15080; hit=AT3G15080; species=arabidopsis; confidence=high
产物	Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820738]; symbol=AT3G15080; hit=AT3G15080; species=arabidopsis; confidence=high
Arabidopsis	`AT3G15080` (AT3G15080) Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820738] identity=69.2; qcov=0.883; evalue=7.28e-114; confidence=high
Rice	`Os08g0377400` (OJ1705_C03.130) - identity=54.9; qcov=0.921; evalue=4.55e-88; confidence=high
GO	GO:0003676 (nucleic acid binding); GO:0005634 (nucleus); GO:0006364 (rRNA processing); GO:0008408 (3'-5' exonuclease activity)
KEGG	-
Pfam	PF00929 (RNase_T)
InterPro	-
eggNOG	-
NR	GeneID:131012837

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796807.1`
2	Nucleolus	核仁	0.80000	`XP_057796807.1`
3	Chromosome	染色体	0.00000	`XP_057796807.1`
4	Centromere	着丝粒	0.00000	`XP_057796807.1`
5	Chromatin	染色质	0.00000	`XP_057796807.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:6211500`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr2:6213976`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr2:6214221`	`C`	`CT`	1bp_insertion	frameshift_variant	1	B132
`Chr2:6214221`	`C`	`CT`	1bp_insertion	CDS_variant	1	B132
`Chr2:6215444`	`T`	`TGA`	2bp_insertion	frameshift_variant	1	B134
`Chr2:6215444`	`T`	`TGA`	2bp_insertion	CDS_variant	1	B134
`Chr2:6215916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr2:6216590`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B109,D6
`Chr2:6216795`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C18,C29,C72,D2
`Chr2:6216798`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B56,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796807.1

265 aa

132

265

RNase_T

PF00929 RNase_T 80-228 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796807.1`	Pfam	`PF00929`	RNase_T	Domain	80	228	3.7e-16	60.8	Exonuclease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940824.1
GAAAAGTTGTACAAAAACAGCGACTTTTGGTGTGGTTCGTTGATTTAAACTGAAGCGCCGAAGTGGAGGGGAAATGGCCGCCAAACTCAAAAACCCTAGCAAAATTCTCAACCCCAACTGGACTCAGCTTCAGGAGAAGCTGAAACTCAATGGCTCCGAGAATAATTTTTCCAAGCACTCAAGTAAATCAAATACAGAAACGTCGAGAAGCATATTAGGGAAGCGGAAGGAGAGGTCGAATGAGGAGTCACAAGCATCAA...

CDS

1 records

下载 CDS FASTA

LOC131012837
ATGGCCGCCAAACTCAAAAACCCTAGCAAAATTCTCAACCCCAACTGGACTCAGCTTCAGGAGAAGCTGAAACTCAATGGCTCCGAGAATAATTTTTCCAAGCACTCAAGTAAATCAAATACAGAAACGTCGAGAAGCATATTAGGGAAGCGGAAGGAGAGGTCGAATGAGGAGTCACAAGCATCAAAACCAAATCCATTGATTCCAATTTCCTCTGACTGCAGTCTCACAGAAATGGTGGCTATGGATTGTGAAATGGT...

Protein

1 records

下载 Protein FASTA

XP_057796807.1
MAAKLKNPSKILNPNWTQLQEKLKLNGSENNFSKHSSKSNTETSRSILGKRKERSNEESQASKPNPLIPISSDCSLTEMVAMDCEMVGVSSLGNKSALGRVTLVNKWGNVVYDEYVRPLEYVVDFRTEISGIRPRDLKKAKDFNVVQKKVDEIINGRILVGHALHNDLKALLLTHPKKDIRDTAQYAPFLKEGRSRSLKNLADEFLSVDIQNGEHCPVEDARAAMLLYQRNRKQWERSVKDFKRLKEKQKKRKPKKKLKD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器