当前解析结果
SmilChr02G000470| 统一新 Gene ID | SmilChr02G000470 |
|---|---|
| 名称 | SmilChr02G000470 |
| 描述 | uncharacterized SmilChr02G000470 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 6351915 - 6354749 / + |
| NCBI Gene ID | LOC131007903 |
|---|---|
| GeneID | 131007903 |
| locus_tag | - |
| NCBI Name | LOC131007903 |
| 原始查询 | SmilChr02G000470 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=26.9; qcov=0.158; evalue=4.42e-10; confidence=weak |
| Rice | Os08g0202300- identity=32.6; qcov=0.344; evalue=1.78e-55; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF09337 (zf-H2C2); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007903 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057790798.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057790798.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057790798.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790798.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790798.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:6351972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr2:6351975 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B23,C5,C8 |
Chr2:6351981 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
Chr2:6352002 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B112,B54,B77,C39,C84 |
Chr2:6352051 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:6352052 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,C5 |
Chr2:6352055 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,C5 |
Chr2:6352072 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B119,B122,B81 |
Chr2:6352080 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B99 |
Chr2:6352080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr2:6352083 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,C77 |
Chr2:6352095 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B117,C31,C41,C75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790798.1PF00078
RVT_1 3-162 aa
PF17919
RT_RNaseH_2 225-323 aa
PF17917
RT_RNaseH 257-352 aa
PF13456
RVT_3 387-504 aa
PF17921
Integrase_H2C2 595-646 aa
PF09337
zf-H2C2 607-642 aa
PF00665
rve 661-759 aa
PF31073
DUF8803 884-943 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790798.1 |
Pfam | PF00078 |
RVT_1 | Domain | 3 | 162 | 2.7e-32 | 113.0 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057790798.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 225 | 323 | 3.7e-19 | 69.4 | RNase H-like domain found in reverse transcriptase |
XP_057790798.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 257 | 352 | 1.2e-11 | 45.4 | RNase H-like domain found in reverse transcriptase |
XP_057790798.1 |
Pfam | PF13456 |
RVT_3 | Domain | 387 | 504 | 4.5e-17 | 62.8 | Reverse transcriptase-like |
XP_057790798.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 595 | 646 | 1.2e-10 | 42.1 | Integrase zinc binding domain |
XP_057790798.1 |
Pfam | PF09337 |
zf-H2C2 | Domain | 607 | 642 | 6.4e-06 | 27.1 | H2C2 zinc finger |
XP_057790798.1 |
Pfam | PF00665 |
rve | Domain | 661 | 759 | 4.1e-19 | 69.4 | Integrase core domain |
XP_057790798.1 |
Pfam | PF31073 |
DUF8803 | Domain | 884 | 943 | 9.7e-23 | 80.5 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。