当前解析结果
SmilChr02G000475| 统一新 Gene ID | SmilChr02G000475 |
|---|---|
| 名称 | SmilChr02G000475 |
| 描述 | uncharacterized SmilChr02G000475 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 6509284 - 6513414 / - |
| NCBI Gene ID | LOC131007904 |
|---|---|
| GeneID | 131007904 |
| locus_tag | - |
| NCBI Name | LOC131007904 |
| 原始查询 | SmilChr02G000475 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0357300; species=rice; confidence=low |
| 产物 | hit=Os04g0357300; species=rice; confidence=low |
| Arabidopsis | AT5G28780 (AT5G28780)PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:832993] identity=40.3; qcov=0.216; evalue=1.05e-38; confidence=weak |
| Rice | Os04g0357300- identity=42.2; qcov=0.332; evalue=9.02e-77; confidence=low |
| GO | GO:0000723 (telomere maintenance); GO:0003678 (DNA helicase activity); GO:0006281 (DNA repair) |
| KEGG | - |
| Pfam | PF05970 (PIF1); PF14214 (Helitron_like_N); PF21530 (Pif1_2B_dom) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007904 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790800.1 |
| 2 | Telomere | 端粒 | 0.20000 | XP_057790800.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057790800.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790800.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790800.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:6509326 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C14 |
Chr2:6509326 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C14 |
Chr2:6509327 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B122 |
Chr2:6509370 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B33,C14,D10 |
Chr2:6509371 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr2:6509423 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B134,B22,B24,B52 |
Chr2:6509435 |
AC |
A |
1bp_deletion | frameshift_variant | 5 | B119,B134,B64,C45,C63 |
Chr2:6509435 |
AC |
A |
1bp_deletion | CDS_variant | 5 | B119,B134,B64,C45,C63 |
Chr2:6509488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,C31,C72 |
Chr2:6509517 |
GC |
G |
1bp_deletion | frameshift_variant | 7 | A25,B11,B133,B57,C18,C3,C77 |
Chr2:6509556 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B55,C63 |
Chr2:6509612 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B19,B34,B81,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790800.1PF14214
Helitron_like_N 153-318 aa
PF05970
PIF1 669-819 aa
PF21530
Pif1_2B_dom 880-925 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790800.1 |
Pfam | PF14214 |
Helitron_like_N | Domain | 153 | 318 | 5.7e-36 | 125.2 | Helitron helicase-like domain at N-terminus |
XP_057790800.1 |
Pfam | PF05970 |
PIF1 | Family | 669 | 819 | 1.3e-50 | 172.8 | PIF1-like helicase |
XP_057790800.1 |
Pfam | PF21530 |
Pif1_2B_dom | Domain | 880 | 925 | 2.1e-17 | 63.3 | DNA helicase Pif1, 2B domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。