当前解析结果
SmilChr02G000478| 统一新 Gene ID | SmilChr02G000478 |
|---|---|
| 名称 | SmilChr02G000478 |
| 描述 | uncharacterized SmilChr02G000478 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 6570000 - 6570659 / + |
| NCBI Gene ID | LOC131007907 |
|---|---|
| GeneID | 131007907 |
| locus_tag | - |
| NCBI Name | LOC131007907 |
| 原始查询 | SmilChr02G000478 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844380]; symbol=AT1G80400; hit=AT1G80400; species=arabidopsis; confidence=low |
| 产物 | RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844380]; symbol=AT1G80400; hit=AT1G80400; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G80400 (AT1G80400)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844380] identity=40; qcov=0.32; evalue=3.58e-12; confidence=low |
| Rice | Os02g0735900- identity=40.5; qcov=0.338; evalue=2.08e-11; confidence=low |
| GO | GO:0005737 (cytoplasm); GO:0008270 (zinc ion binding); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007907 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790803.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057790803.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057790803.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790803.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790803.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:6570000 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C63 |
Chr2:6570000 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C63 |
Chr2:6570002 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C63 |
Chr2:6570007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr2:6570045 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B31,B32,C28,C49 |
Chr2:6570075 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:6570076 |
TCA |
T |
2bp_deletion | frameshift_variant | 1 | C20 |
Chr2:6570076 |
TCA |
T |
2bp_deletion | CDS_variant | 1 | C20 |
Chr2:6570186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B23,C68,D3 |
Chr2:6570200 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr2:6570253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr2:6570305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B31,C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790803.1PF12678
zf-rbx1 173-216 aa
PF13639
zf-RING_2 174-216 aa
PF17123
zf-RING_11 175-202 aa
PF00097
zf-C3HC4 175-215 aa
PF13923
zf-C3HC4_2 175-215 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790803.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 173 | 216 | 8.6e-08 | 33.0 | RING-H2 zinc finger domain |
XP_057790803.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 174 | 216 | 1.3e-13 | 51.7 | Ring finger domain |
XP_057790803.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 175 | 202 | 2.9e-09 | 37.2 | RING-like zinc finger |
XP_057790803.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 175 | 215 | 2.9e-05 | 24.6 | Zinc finger, C3HC4 type (RING finger) |
XP_057790803.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 175 | 215 | 2.9e-07 | 30.9 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。