当前解析结果
SmilChr02G000484| 统一新 Gene ID | SmilChr02G000484 |
|---|---|
| 名称 | SmilChr02G000484 |
| 描述 | pentatricopeptide repeat-containing protein At4g02750-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 6603899 - 6605266 / + |
| NCBI Gene ID | LOC131012854 |
|---|---|
| GeneID | 131012854 |
| locus_tag | - |
| NCBI Name | LOC131012854 |
| 原始查询 | SmilChr02G000484 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At4g02750-like |
| 产物 | pentatricopeptide repeat-containing protein At4g02750-like |
| Arabidopsis | AT4G02750 (AT4G02750)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828187] identity=45; qcov=0.989; evalue=1.34e-44; confidence=medium |
| Rice | Os04g0432800- identity=39.4; qcov=0.87; evalue=9.19e-37; confidence=medium |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012854 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057796825.1 |
| 2 | Chloroplast | 叶绿体 | 0.20000 | XP_057796825.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057796825.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796825.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796825.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:6604123 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | B103,B115,B22,B52,B8,B88,C35,C59,D1 |
Chr2:6604213 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr2:6604287 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C6 |
Chr2:6604287 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C6 |
Chr2:6604288 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,B104 |
Chr2:6604293 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B54,C50 |
Chr2:6604293 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B54,C50 |
Chr2:6604305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B115,B41 |
Chr2:6604336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B38 |
Chr2:6604356 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B124,B4,C27,D3 |
Chr2:6604415 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C14 |
Chr2:6604415 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796825.1PF13041
PPR_2 64-95 aa
PF12854
PPR_1 65-91 aa
PF01535
PPR 66-95 aa
PF01535
PPR 100-123 aa
PF13041
PPR_2 125-154 aa
PF12854
PPR_1 126-153 aa
PF13812
PPR_3 126-153 aa
PF01535
PPR 128-157 aa
PF01535
PPR 159-184 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796825.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 64 | 95 | 4.9e-32 | 110.5 | PPR repeat family |
XP_057796825.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 65 | 91 | 2e-28 | 98.5 | PPR repeat |
XP_057796825.1 |
Pfam | PF01535 |
PPR | Repeat | 66 | 95 | 3.6e-34 | 115.3 | PPR repeat |
XP_057796825.1 |
Pfam | PF01535 |
PPR | Repeat | 100 | 123 | 3.6e-34 | 115.3 | PPR repeat |
XP_057796825.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 125 | 154 | 4.9e-32 | 110.5 | PPR repeat family |
XP_057796825.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 126 | 153 | 2e-28 | 98.5 | PPR repeat |
XP_057796825.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 126 | 153 | 5.2e-11 | 43.2 | Pentatricopeptide repeat domain |
XP_057796825.1 |
Pfam | PF01535 |
PPR | Repeat | 128 | 157 | 3.6e-34 | 115.3 | PPR repeat |
XP_057796825.1 |
Pfam | PF01535 |
PPR | Repeat | 159 | 184 | 3.6e-34 | 115.3 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。