Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000490`

染色体: Chr02 坐标: 6700944-6705414 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000490`
名称	SmilChr02G000490
描述	probable LRR receptor-like serine/threonine-protein kinase At3g47570
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	6700944 - 6705414 / `+`

ID 对照

NCBI Gene ID	`LOC131012859`
GeneID	`131012859`
locus_tag	`-`
NCBI Name	`LOC131012859`
原始查询	`SmilChr02G000490`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At3g47570
产物	probable LRR receptor-like serine/threonine-protein kinase At3g47570
Arabidopsis	`AT4G20140` (GSO1) Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760] identity=34.6; qcov=1.07; evalue=0; confidence=low
Rice	`Os02g0216000` (B1307A11.13) - identity=38.8; qcov=1.03; evalue=0; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131012859

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057796832.1`
2	Nucleus	细胞核	0.00000	`XP_057796832.1`
3	Chromosome	染色体	0.00000	`XP_057796832.1`
4	Centromere	着丝粒	0.00000	`XP_057796832.1`
5	Chromatin	染色质	0.00000	`XP_057796832.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:6701307`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B122
`Chr2:6701307`	`TC`	`T`	1bp_deletion	CDS_variant	1	B122
`Chr2:6701326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,D1
`Chr2:6701530`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr2:6701531`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A22,B128
`Chr2:6701537`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B64,B93,C13,C56
`Chr2:6701539`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr2:6701626`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr2:6701629`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B42
`Chr2:6701632`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr2:6701657`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr2:6701683`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796832.1

1186 aa

593

1186

LRRNT_2

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 30-70 aa PF13855 LRR_8 132-182 aa PF00560 LRR_1 147-169 aa PF00560 LRR_1 171-193 aa PF00560 LRR_1 268-290 aa PF00560 LRR_1 292-314 aa PF00560 LRR_1 366-387 aa PF13855 LRR_8 437-497 aa PF00560 LRR_1 438-460 aa PF00560 LRR_1 588-609 aa PF00560 LRR_1 635-657 aa PF00560 LRR_1 686-705 aa PF00560 LRR_1 707-728 aa PF00560 LRR_1 731-752 aa PF00069 Pkinase 875-1041 aa PF07714 PK_Tyr_Ser-Thr 877-1026 aa PF07714 PK_Tyr_Ser-Thr 1069-1177 aa

XP_057796833.1

1155 aa

578

1155

LRRNT_2

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796832.1`	Pfam	`PF08263`	LRRNT_2	Family	30	70	1.2e-09	39.0	Leucine rich repeat N-terminal domain
`XP_057796832.1`	Pfam	`PF13855`	LRR_8	Repeat	132	182	8.3e-48	160.7	Leucine rich repeat
`XP_057796832.1`	Pfam	`PF00560`	LRR_1	Repeat	147	169	7.5e-55	171.7	Leucine Rich Repeat
`XP_057796832.1`	Pfam	`PF00560`	LRR_1	Repeat	171	193	7.5e-55	171.7	Leucine Rich Repeat
`XP_057796832.1`	Pfam	`PF00560`	LRR_1	Repeat	268	290	7.5e-55	171.7	Leucine Rich Repeat
`XP_057796832.1`	Pfam	`PF00560`	LRR_1	Repeat	292	314	7.5e-55	171.7	Leucine Rich Repeat
`XP_057796832.1`	Pfam	`PF00560`	LRR_1	Repeat	366	387	7.5e-55	171.7	Leucine Rich Repeat
`XP_057796832.1`	Pfam	`PF13855`	LRR_8	Repeat	437	497	8.3e-48	160.7	Leucine rich repeat
`XP_057796832.1`	Pfam	`PF00560`	LRR_1	Repeat	438	460	7.5e-55	171.7	Leucine Rich Repeat
`XP_057796832.1`	Pfam	`PF00560`	LRR_1	Repeat	588	609	7.5e-55	171.7	Leucine Rich Repeat
`XP_057796832.1`	Pfam	`PF00560`	LRR_1	Repeat	635	657	7.5e-55	171.7	Leucine Rich Repeat
`XP_057796832.1`	Pfam	`PF00560`	LRR_1	Repeat	686	705	7.5e-55	171.7	Leucine Rich Repeat
`XP_057796832.1`	Pfam	`PF00560`	LRR_1	Repeat	707	728	7.5e-55	171.7	Leucine Rich Repeat
`XP_057796832.1`	Pfam	`PF00560`	LRR_1	Repeat	731	752	7.5e-55	171.7	Leucine Rich Repeat
`XP_057796832.1`	Pfam	`PF00069`	Pkinase	Domain	875	1041	5.7e-34	118.4	Protein kinase domain
`XP_057796832.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	877	1026	5.4e-34	118.4	Protein tyrosine and serine/threonine kinase
`XP_057796832.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	1069	1177	5.4e-34	118.4	Protein tyrosine and serine/threonine kinase
`XP_057796833.1`	Pfam	`PF08263`	LRRNT_2	Family	30	70	1.2e-09	39.0	Leucine rich repeat N-terminal domain
`XP_057796833.1`	Pfam	`PF13855`	LRR_8	Repeat	132	182	4.6e-48	161.5	Leucine rich repeat
`XP_057796833.1`	Pfam	`PF00560`	LRR_1	Repeat	147	169	3.2e-55	172.8	Leucine Rich Repeat
`XP_057796833.1`	Pfam	`PF00560`	LRR_1	Repeat	171	193	3.2e-55	172.8	Leucine Rich Repeat
`XP_057796833.1`	Pfam	`PF00560`	LRR_1	Repeat	268	290	3.2e-55	172.8	Leucine Rich Repeat
`XP_057796833.1`	Pfam	`PF00560`	LRR_1	Repeat	292	314	3.2e-55	172.8	Leucine Rich Repeat
`XP_057796833.1`	Pfam	`PF00560`	LRR_1	Repeat	366	387	3.2e-55	172.8	Leucine Rich Repeat
`XP_057796833.1`	Pfam	`PF13855`	LRR_8	Repeat	437	497	4.6e-48	161.5	Leucine rich repeat
`XP_057796833.1`	Pfam	`PF00560`	LRR_1	Repeat	438	460	3.2e-55	172.8	Leucine Rich Repeat
`XP_057796833.1`	Pfam	`PF00560`	LRR_1	Repeat	588	609	3.2e-55	172.8	Leucine Rich Repeat
`XP_057796833.1`	Pfam	`PF00560`	LRR_1	Repeat	635	657	3.2e-55	172.8	Leucine Rich Repeat
`XP_057796833.1`	Pfam	`PF00560`	LRR_1	Repeat	686	705	3.2e-55	172.8	Leucine Rich Repeat
`XP_057796833.1`	Pfam	`PF00560`	LRR_1	Repeat	707	728	3.2e-55	172.8	Leucine Rich Repeat
`XP_057796833.1`	Pfam	`PF00560`	LRR_1	Repeat	731	752	3.2e-55	172.8	Leucine Rich Repeat
`XP_057796833.1`	Pfam	`PF00069`	Pkinase	Domain	875	1143	1.3e-38	133.7	Protein kinase domain
`XP_057796833.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	877	1146	5.5e-39	134.8	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940849.1
TCCGTACGTCTTTGCCTTTGTCTCAATCTCAAGTCTTCGTCTTCGTCTCAATCTCAATAAGTGATTGGGGAAATAGCACCTAATTAACGACGACTTGACTCAAAAGGAAAAACAAAAAACCACACCCATGAAGATTCTCAAGTCAAGCAAGCCTTGTAATATTTGTGTATATATGATGATTATTGCATACAGTTATTAGGGACTTAATTATCATAATAGAATCACAATTTGCAGCCATGGAGAAAAAGCTTTATTGCATT...

XM_057940850.1
TCCGTACGTCTTTGCCTTTGTCTCAATCTCAAGTCTTCGTCTTCGTCTCAATCTCAATAAGTGATTGGGGAAATAGCACCTAATTAACGACGACTTGACTCAAAAGGAAAAACAAAAAACCACACCCATGAAGATTCTCAAGTCAAGCAAGCCTTGTAATATTTGTGTATATATGATGATTATTGCATACAGTTATTAGGGACTTAATTATCATAATAGAATCACAATTTGCAGCCATGGAGAAAAAGCTTTATTGCATT...

CDS

2 records

下载 CDS FASTA

LOC131012859
ATGGAGAAAAAGCTTTATTGCATTTTTGCATTCCTCACCATAACCTTCCAAATGCTTTCTTGTGTAGCCAAACAACCTATGAGCCTTGCCACTGATCAAACTGCCCTTCTTTCACTCAAAAAACACATCACCTCCGACCCTTCTCGCATACTTGCAACTAATTGGACCAATTCGAGCTCCGTCTGCAACTGGATTGGCGTCGCTTGCAGCTTGCGCCACCGAAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTT...

Protein

2 records

下载 Protein FASTA

XP_057796832.1
MEKKLYCIFAFLTITFQMLSCVAKQPMSLATDQTALLSLKKHITSDPSRILATNWTNSSSVCNWIGVACSLRHRRVAALNLSNMALFGTIPPQLGHLSFLVSLDLTNNLFHGDLPQELSLLRRLKFISFRLNNFTGDIPPMFGQLPKLEYLNLRNNSFIGSIPKSLSNLTNLQFLDLSSNSLSGEIPKELGRLQSLQSLRFQFNHLFGAIPSAIFNISTLVAIALRNNELSGSLPTDMCRNLPFLAMILLSENRLSGTIP...

XP_057796833.1
MEKKLYCIFAFLTITFQMLSCVAKQPMSLATDQTALLSLKKHITSDPSRILATNWTNSSSVCNWIGVACSLRHRRVAALNLSNMALFGTIPPQLGHLSFLVSLDLTNNLFHGDLPQELSLLRRLKFISFRLNNFTGDIPPMFGQLPKLEYLNLRNNSFIGSIPKSLSNLTNLQFLDLSSNSLSGEIPKELGRLQSLQSLRFQFNHLFGAIPSAIFNISTLVAIALRNNELSGSLPTDMCRNLPFLAMILLSENRLSGTIP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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