Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000500`

染色体: Chr02 坐标: 6882747-6883700 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000500`
名称	SmilChr02G000500
描述	uncharacterized SmilChr02G000500
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	6882747 - 6883700 / `-`

ID 对照

NCBI Gene ID	`LOC131007912`
GeneID	`131007912`
locus_tag	`-`
NCBI Name	`LOC131007912`
原始查询	`SmilChr02G000500`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high
产物	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high
Arabidopsis	`AT1G19260` (AT1G19260) TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=45.5; qcov=0.984; evalue=1.38e-89; confidence=high
Rice	`Os02g0301400` - identity=37.5; qcov=0.379; evalue=5.56e-20; confidence=low
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT)
InterPro	-
eggNOG	-
NR	GeneID:131007912

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790807.1`
2	Chromosome	染色体	0.00000	`XP_057790807.1`
3	Centromere	着丝粒	0.00000	`XP_057790807.1`
4	Chromatin	染色质	0.00000	`XP_057790807.1`
5	Telomere	端粒	0.00000	`XP_057790807.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:6882779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B15,B55,C38,C70,D2
`Chr2:6882880`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B138,C8
`Chr2:6882932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B100,B138,C8,C85
`Chr2:6882934`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr2:6882941`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B100,B138,C8,C85
`Chr2:6882943`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,C48,D3
`Chr2:6883120`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B2,B39,B65,C49,C55
`Chr2:6883170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr2:6883238`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr2:6883439`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr2:6883608`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,B61
`Chr2:6883621`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790807.1

317 aa

158

317

Dimer_Tnp_hAT

PF05699 Dimer_Tnp_hAT 228-294 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790807.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	228	294	6e-10	39.5	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934824.1
ATGAACTTGTTTTCTACAATTGTTAAAGTTCTTGTGATGATTGGGAAGAATGGCTCTAACTCGGATGATAAGGTAAAAGCTCAAGGCATTTTGTACTCACTAGAGTCATTTAATTTTGTGTTTTTGGCACATCTAATGACTACTATATTTGGGTACACTAATGATTTGTGTCTTGCTTTGCAAAGAAGAGATCAAGATATTATTAGGGCTATGAGACTTGTCACTTTGACCAAAGTGACATTACAGAAAATGAGAGACAA...

CDS

1 records

下载 CDS FASTA

LOC131007912
ATGAACTTGTTTTCTACAATTGTTAAAGTTCTTGTGATGATTGGGAAGAATGGCTCTAACTCGGATGATAAGGTAAAAGCTCAAGGCATTTTGTACTCACTAGAGTCATTTAATTTTGTGTTTTTGGCACATCTAATGACTACTATATTTGGGTACACTAATGATTTGTGTCTTGCTTTGCAAAGAAGAGATCAAGATATTATTAGGGCTATGAGACTTGTCACTTTGACCAAAGTGACATTACAGAAAATGAGAGACAA...

Protein

1 records

下载 Protein FASTA

XP_057790807.1
MNLFSTIVKVLVMIGKNGSNSDDKVKAQGILYSLESFNFVFLAHLMTTIFGYTNDLCLALQRRDQDIIRAMRLVTLTKVTLQKMRDNGWETHLNKVISFCNNNEIVVPDMEACYIPQGRSKRFAQQVSYLHHFRVDVFIEVIDLLLQELDNRFDEVNMELLICMASLNPKDGFSSYDKEKVLKLATFYPSKFSSIDLSTLECQLDIFMEDMRRDDKFKNLEDISSLSMKFVETKRHMTYPLVFLLIKLVLILPVATASVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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