当前解析结果
SmilChr02G000502| 统一新 Gene ID | SmilChr02G000502 |
|---|---|
| 名称 | SmilChr02G000502 |
| 描述 | uncharacterized SmilChr02G000502 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 6903650 - 6905474 / - |
| NCBI Gene ID | LOC131007914 |
|---|---|
| GeneID | 131007914 |
| locus_tag | - |
| NCBI Name | LOC131007914 |
| 原始查询 | SmilChr02G000502 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=weak |
| 产物 | hit=Os04g0191000; species=rice; confidence=weak |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=33.8; qcov=0.295; evalue=5.35e-12; confidence=weak |
| Rice | Os04g0191000- identity=37.5; qcov=0.287; evalue=1.23e-28; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00078 (RVT_1); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007914 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057790809.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057790809.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057790809.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790809.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790809.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:6903726 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr2:6903854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,D10 |
Chr2:6903893 |
TC |
T |
1bp_deletion | frameshift_variant | 3 | B106,B50,C75 |
Chr2:6903893 |
TC |
T |
1bp_deletion | CDS_variant | 3 | B106,B50,C75 |
Chr2:6903932 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C17,C18,C55 |
Chr2:6903949 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr2:6904020 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A15,C43 |
Chr2:6904026 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr2:6904029 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,C43 |
Chr2:6904035 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,B39,C43 |
Chr2:6904044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A15,C43 |
Chr2:6904049 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790809.1PF00078
RVT_1 4-128 aa
PF17917
RT_RNaseH 149-248 aa
PF17919
RT_RNaseH_2 150-219 aa
PF00075
RNase_H 296-378 aa
PF13456
RVT_3 300-416 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790809.1 |
Pfam | PF00078 |
RVT_1 | Domain | 4 | 128 | 5.8e-27 | 95.6 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057790809.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 149 | 248 | 1.6e-22 | 80.4 | RNase H-like domain found in reverse transcriptase |
XP_057790809.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 150 | 219 | 1.5e-15 | 57.8 | RNase H-like domain found in reverse transcriptase |
XP_057790809.1 |
Pfam | PF00075 |
RNase_H | Domain | 296 | 378 | 9e-08 | 33.1 | RNase H |
XP_057790809.1 |
Pfam | PF13456 |
RVT_3 | Domain | 300 | 416 | 9.2e-19 | 68.3 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。