当前解析结果
SmilChr02G000509| 统一新 Gene ID | SmilChr02G000509 |
|---|---|
| 名称 | SmilChr02G000509 |
| 描述 | uncharacterized SmilChr02G000509 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 7010483 - 7028520 / + |
| NCBI Gene ID | LOC131007919 |
|---|---|
| GeneID | 131007919 |
| locus_tag | - |
| NCBI Name | LOC131007919 |
| 原始查询 | SmilChr02G000509 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=medium |
| 产物 | hit=Os12g0142900; species=rice; confidence=medium |
| Arabidopsis | ATMG00860- identity=40.3; qcov=0.19; evalue=8.15e-28; confidence=weak |
| Rice | Os12g0142900- identity=37; qcov=0.651; evalue=3.97e-100; confidence=medium |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00098 (zf-CCHC); PF08284 (RVP_2); PF17919 (RT_RNaseH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007919 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057790814.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057790814.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057790814.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057790814.1 |
| 5 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057790814.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:7012426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:7012482 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B119 |
Chr2:7012509 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr2:7012604 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B139,B19,B32,C4 |
Chr2:7012604 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B139,B19,B32,C4 |
Chr2:7012622 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr2:7012681 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B62,B64 |
Chr2:7012702 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B62,B64,C85 |
Chr2:7012708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B88,C11,C46,C60,C67 |
Chr2:7012715 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C65 |
Chr2:7012715 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C65 |
Chr2:7012727 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790814.1PF00098
zf-CCHC 171-187 aa
PF08284
RVP_2 246-308 aa
PF08284
RVP_2 311-344 aa
PF00078
RVT_1 444-601 aa
PF17919
RT_RNaseH_2 664-707 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790814.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 171 | 187 | 6.2e-06 | 26.8 | Zinc knuckle |
XP_057790814.1 |
Pfam | PF08284 |
RVP_2 | Domain | 246 | 308 | 1e-17 | 64.9 | Retroviral aspartyl protease |
XP_057790814.1 |
Pfam | PF08284 |
RVP_2 | Domain | 311 | 344 | 1e-17 | 64.9 | Retroviral aspartyl protease |
XP_057790814.1 |
Pfam | PF00078 |
RVT_1 | Domain | 444 | 601 | 2e-37 | 129.8 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057790814.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 664 | 707 | 6.7e-13 | 49.3 | RNase H-like domain found in reverse transcriptase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。