Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000513`

染色体: Chr02 坐标: 7077242-7081611 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000513`
名称	SmilChr02G000513
描述	ubiquitin-40S ribosomal protein S27a-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	7077242 - 7081611 / `+`

ID 对照

NCBI Gene ID	`LOC131007921`
GeneID	`131007921`
locus_tag	`-`
NCBI Name	`LOC131007921`
原始查询	`SmilChr02G000513`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquitin-40S ribosomal protein S27a-like
产物	ubiquitin-40S ribosomal protein S27a-like
Arabidopsis	`AT2G47110` (UBQ6) ubiquitin 6 [Source:NCBI gene (formerly Entrezgene);Acc:819323] identity=96; qcov=0.822; evalue=1.31e-105; confidence=high
Rice	`Os01g0328400` (RPS27a) - identity=94.8; qcov=0.838; evalue=2.21e-89; confidence=high
GO	GO:0003735 (structural constituent of ribosome); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005840 (ribosome); GO:0006412 (translation); GO:0016567 (protein ubiquitination); GO:0019941 (modification-dependent protein catabolic process); GO:0031386 (protein tag activity); GO:0031625 (ubiquitin protein ligase binding)
KEGG	smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage)); smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00240 (ubiquitin); PF01599 (Ribosomal_S27); PF11976 (Rad60-SLD); PF14560 (Ubiquitin_2)
InterPro	-
eggNOG	-
NR	GeneID:131007921

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790816.1`
2	Cytoplasm	细胞质	1.00000	`XP_057790816.1`
3	Cytosol	细胞质基质	1.00000	`XP_057790816.1`
4	Nucleoplasm	核质	0.80000	`XP_057790816.1`
5	Nucleolus	核仁	0.20000	`XP_057790816.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:7077262`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:7077276`	`A`	`AC`	1bp_insertion	frameshift_variant	24	A22,B105,B12,B123,B126,B24,B25,B31,B38,B39,B57,B58,B6,B65,B70,B77,B80,B87,B9,C48,C49,C59,C67,C85
`Chr2:7077315`	`CG`	`C`	1bp_deletion	frameshift_variant	2	B120,C37
`Chr2:7077315`	`CG`	`C`	1bp_deletion	CDS_variant	2	B120,C37
`Chr2:7077317`	`G`	`GC`	1bp_insertion	frameshift_variant	110	A11,A18,A19,A20,A21,A24,A25,A5,A8,B1,B101,B102,B106,B107,B108,B109,B11,B111,B112,B115,B117,B118,B12,B122,B123,B125,B13,B130,B131,B133,B134,B137,B139,B140,B2,B20,B23,B25,B28,B29,B30,B32,B34,B4,B40,B49,B50,B51,B52,B53,B55,B57,B62,B64,B65,B68,B71,B74,B78,B79,B80,B86,B88,B89,B90,B92,B93,B97,C1,C11,C15,C17,C18,C21,C23,C26,C29,C3,C31,C39,C40,C42,C44,C46,C49,C51,C57,C6,C61,C63,C64,C66,C67,C69,C70,C72,C73,C75,C77,C78,C80,C83,C84,C86,D3,D5,D6,D7,D8,D9
`Chr2:7077322`	`GGC`	`*`	2bp_deletion	CDS_variant	3	B120,B6,C37
`Chr2:7081062`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B3,C12,C21
`Chr2:7081115`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr2:7081128`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B85,B90,B92,C21,C73
`Chr2:7081148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,C31
`Chr2:7081152`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B33,B82,C41,C60
`Chr2:7081179`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B3,B54,C12,C21,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790816.1

185 aa

185

Rad60-SLD

Ubiquitin_2

ubiquitin

Ribosomal_S27

PF11976 Rad60-SLD 30-100 aa PF14560 Ubiquitin_2 31-98 aa PF00240 ubiquitin 32-103 aa PF01599 Ribosomal_S27 131-178 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790816.1`	Pfam	`PF11976`	Rad60-SLD	Family	30	100	4.5e-17	62.3	Ubiquitin-2 like Rad60 SUMO-like
`XP_057790816.1`	Pfam	`PF14560`	Ubiquitin_2	Domain	31	98	3.6e-05	24.9	Ubiquitin-like domain
`XP_057790816.1`	Pfam	`PF00240`	ubiquitin	Domain	32	103	1.7e-32	111.7	Ubiquitin family
`XP_057790816.1`	Pfam	`PF01599`	Ribosomal_S27	Domain	131	178	4.5e-27	94.2	Ribosomal protein S27a

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934833.1
ATGAAGAACATAAAACGTGACATTTGGCAAGACAACCAACATAAAGAGCAAAAACAACATACGAACGAAACCCCGGCCCCGTGTGAATTGCAGATCTTCGTGAAAACCCTAACTGGTAAGACGATCACCTTGGAGGTTGAATCCTCCGACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCGCCGA...

CDS

1 records

下载 CDS FASTA

LOC131007921
ATGAAGAACATAAAACGTGACATTTGGCAAGACAACCAACATAAAGAGCAAAAACAACATACGAACGAAACCCCGGCCCCGTGTGAATTGCAGATCTTCGTGAAAACCCTAACTGGTAAGACGATCACCTTGGAGGTTGAATCCTCCGACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCGCCGA...

Protein

1 records

下载 Protein FASTA

XP_057790816.1
MKNIKRDIWQDNQHKEQKQHTNETPAPCELQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKTAGD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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