当前解析结果
SmilChr02G000520| 统一新 Gene ID | SmilChr02G000520 |
|---|---|
| 名称 | SmilChr02G000520 |
| 描述 | receptor kinase-like protein Xa21 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 7161389 - 7162864 / + |
| NCBI Gene ID | LOC131012876 |
|---|---|
| GeneID | 131012876 |
| locus_tag | - |
| NCBI Name | LOC131012876 |
| 原始查询 | SmilChr02G000520 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor kinase-like protein Xa21 |
| 产物 | receptor kinase-like protein Xa21 |
| Arabidopsis | AT5G20480 (EFR)EF-TU receptor [Source:NCBI gene (formerly Entrezgene);Acc:832170] identity=32; qcov=1.1; evalue=2.16e-58; confidence=low |
| Rice | Os01g0694100 (LRR-RLK)- identity=38.3; qcov=0.93; evalue=2.52e-67; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012876 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796848.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796848.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796848.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796848.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796848.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:7161451 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B36,B8,C55 |
Chr2:7161512 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr2:7161542 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B67,C13 |
Chr2:7161542 |
A |
AT |
1bp_insertion | CDS_variant | 2 | B67,C13 |
Chr2:7161601 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B34,B73,B81 |
Chr2:7161605 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A14,A7,B129,B136,B16 |
Chr2:7161608 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C44,C64,D7 |
Chr2:7161626 |
GC |
G |
1bp_deletion | frameshift_variant | 4 | A5,B21,C46,C47 |
Chr2:7161626 |
GC |
G |
1bp_deletion | CDS_variant | 4 | A5,B21,C46,C47 |
Chr2:7161669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B140,B72,B90 |
Chr2:7161673 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B3,B5,C30,D2 |
Chr2:7161699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B99,C64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796848.1PF08263
LRRNT_2 33-73 aa
PF13855
LRR_8 142-185 aa
PF00560
LRR_1 150-172 aa
PF00560
LRR_1 174-196 aa
PF13855
LRR_8 198-258 aa
PF00560
LRR_1 248-269 aa
PF13855
LRR_8 248-306 aa
PF00560
LRR_1 271-293 aa
PF00560
LRR_1 295-317 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796848.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 33 | 73 | 7e-09 | 36.5 | Leucine rich repeat N-terminal domain |
XP_057796848.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 142 | 185 | 9.2e-25 | 86.9 | Leucine rich repeat |
XP_057796848.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 150 | 172 | 4.1e-31 | 101.0 | Leucine Rich Repeat |
XP_057796848.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 174 | 196 | 4.1e-31 | 101.0 | Leucine Rich Repeat |
XP_057796848.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 198 | 258 | 9.2e-25 | 86.9 | Leucine rich repeat |
XP_057796848.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 248 | 269 | 4.1e-31 | 101.0 | Leucine Rich Repeat |
XP_057796848.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 248 | 306 | 9.2e-25 | 86.9 | Leucine rich repeat |
XP_057796848.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 271 | 293 | 4.1e-31 | 101.0 | Leucine Rich Repeat |
XP_057796848.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 295 | 317 | 4.1e-31 | 101.0 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。