当前解析结果
SmilChr02G000521| 统一新 Gene ID | SmilChr02G000521 |
|---|---|
| 名称 | SmilChr02G000521 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 7163219 - 7165430 / + |
| NCBI Gene ID | LOC131012875 |
|---|---|
| GeneID | 131012875 |
| locus_tag | - |
| NCBI Name | LOC131012875 |
| 原始查询 | SmilChr02G000521 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| Arabidopsis | AT3G47570 (AT3G47570)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=35.5; qcov=1.14; evalue=9.88e-107; confidence=medium |
| Rice | Os11g0692500- identity=41.1; qcov=0.994; evalue=5.61e-132; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012875 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796847.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796847.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796847.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796847.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796847.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:7163825 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr2:7163826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr2:7163831 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr2:7163860 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:7163879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B2,D4 |
Chr2:7163896 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B58,C52 |
Chr2:7163953 |
CT |
C |
1bp_deletion | frameshift_variant | 14 | A6,A8,B107,B127,B19,B86,B87,B90,C10,C12,C28,C6,C75,D9 |
Chr2:7164047 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B64,B83,C21,C47,D1 |
Chr2:7164103 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr2:7164139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B58,C52,D11 |
Chr2:7164175 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | B101,B108,B33,B40,B46,B82,C60,C78,D5 |
Chr2:7164176 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A5,B21,B30,B8,C33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796847.1PF00560
LRR_1 16-37 aa
PF00560
LRR_1 42-61 aa
PF00560
LRR_1 63-85 aa
PF13855
LRR_8 63-122 aa
PF00560
LRR_1 87-108 aa
PF00560
LRR_1 111-128 aa
PF00069
Pkinase 230-499 aa
PF07714
PK_Tyr_Ser-Thr 233-502 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796847.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 16 | 37 | 1.8e-14 | 51.4 | Leucine Rich Repeat |
XP_057796847.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 42 | 61 | 1.8e-14 | 51.4 | Leucine Rich Repeat |
XP_057796847.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 63 | 85 | 1.8e-14 | 51.4 | Leucine Rich Repeat |
XP_057796847.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 63 | 122 | 1.6e-12 | 47.7 | Leucine rich repeat |
XP_057796847.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 87 | 108 | 1.8e-14 | 51.4 | Leucine Rich Repeat |
XP_057796847.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 111 | 128 | 1.8e-14 | 51.4 | Leucine Rich Repeat |
XP_057796847.1 |
Pfam | PF00069 |
Pkinase | Domain | 230 | 499 | 3.2e-41 | 142.2 | Protein kinase domain |
XP_057796847.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 233 | 502 | 1.3e-39 | 136.8 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。