当前解析结果
SmilChr02G000549| 统一新 Gene ID | SmilChr02G000549 |
|---|---|
| 名称 | SmilChr02G000549 |
| 描述 | receptor kinase-like protein Xa21 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 7641319 - 7646267 / + |
| NCBI Gene ID | LOC131007934 |
|---|---|
| GeneID | 131007934 |
| locus_tag | - |
| NCBI Name | LOC131007934 |
| 原始查询 | SmilChr02G000549 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor kinase-like protein Xa21 |
| 产物 | receptor kinase-like protein Xa21 |
| Arabidopsis | AT5G63930 (AT5G63930)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836514] identity=38.4; qcov=0.529; evalue=2.4e-57; confidence=medium |
| Rice | Os11g0490200- identity=36.6; qcov=0.652; evalue=1.39e-64; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007934 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790828.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057790828.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790828.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790828.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790828.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:7641879 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | C8 |
Chr2:7641879 |
CT |
C |
1bp_deletion | CDS_variant | 1 | C8 |
Chr2:7641882 |
TTC |
T |
2bp_deletion | frameshift_variant | 1 | C8 |
Chr2:7641882 |
TTC |
T |
2bp_deletion | CDS_variant | 1 | C8 |
Chr2:7641893 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr2:7642215 |
G |
GTA |
2bp_insertion | stop_gained,frameshift_variant | 1 | D8 |
Chr2:7642215 |
G |
GTA |
2bp_insertion | CDS_variant | 1 | D8 |
Chr2:7642239 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B59,B99,C47,C87 |
Chr2:7642252 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B12 |
Chr2:7642252 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B12 |
Chr2:7642287 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr2:7642298 |
T |
TC |
1bp_insertion | frameshift_variant | 3 | B1,B15,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790828.1PF08263
LRRNT_2 30-70 aa
PF13855
LRR_8 122-182 aa
PF00560
LRR_1 147-169 aa
PF00560
LRR_1 171-193 aa
PF00560
LRR_1 195-216 aa
PF13855
LRR_8 195-255 aa
PF23598
LRR_14 262-377 aa
PF00560
LRR_1 268-290 aa
PF00560
LRR_1 292-314 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790828.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 30 | 70 | 2.3e-08 | 34.9 | Leucine rich repeat N-terminal domain |
XP_057790828.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 122 | 182 | 1.9e-25 | 89.1 | Leucine rich repeat |
XP_057790828.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 147 | 169 | 2.4e-30 | 98.8 | Leucine Rich Repeat |
XP_057790828.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 171 | 193 | 2.4e-30 | 98.8 | Leucine Rich Repeat |
XP_057790828.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 195 | 216 | 2.4e-30 | 98.8 | Leucine Rich Repeat |
XP_057790828.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 195 | 255 | 1.9e-25 | 89.1 | Leucine rich repeat |
XP_057790828.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 262 | 377 | 1.8e-28 | 100.1 | Leucine-rich repeat region |
XP_057790828.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 268 | 290 | 2.4e-30 | 98.8 | Leucine Rich Repeat |
XP_057790828.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 292 | 314 | 2.4e-30 | 98.8 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。