Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000553`

染色体: Chr02 坐标: 7745046-7753213 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000553`
名称	SmilChr02G000553
描述	probable protein arginine N-methyltransferase 3
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	7745046 - 7753213 / `+`

ID 对照

NCBI Gene ID	`LOC131007936`
GeneID	`131007936`
locus_tag	`-`
NCBI Name	`LOC131007936`
原始查询	`SmilChr02G000553`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable protein arginine N-methyltransferase 3
产物	probable protein arginine N-methyltransferase 3
Arabidopsis	`AT3G12270` (PRMT3) protein arginine methyltransferase 3 [Source:NCBI gene (formerly Entrezgene);Acc:820407] identity=45.8; qcov=0.582; evalue=4.39e-79; confidence=medium
Rice	`Os07g0640000` (OsPRMT3) - identity=41.2; qcov=0.542; evalue=4.49e-59; confidence=medium
GO	-
KEGG	-
Pfam	PF06325 (PrmA); PF08241 (Methyltransf_11); PF13649 (Methyltransf_25); PF21137 (ANM3_C2H2_Zf); PF24769 (At2g29880_C)
InterPro	-
eggNOG	-
NR	GeneID:131007936

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790830.1`
2	Chromosome	染色体	0.00000	`XP_057790830.1`
3	Centromere	着丝粒	0.00000	`XP_057790830.1`
4	Chromatin	染色质	0.00000	`XP_057790830.1`
5	Telomere	端粒	0.00000	`XP_057790830.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:7745370`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr2:7752435`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B138,B20,B48,C34,C5
`Chr2:7752438`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr2:7752451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr2:7752472`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B133,B69
`Chr2:7752482`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B136,B139,B18
`Chr2:7752614`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr2:7752616`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr2:7752664`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B18
`Chr2:7752672`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B18
`Chr2:7752815`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr2:7752824`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B110,B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790830.1

574 aa

287

574

ANM3_C2H2_Zf

PrmA

Methyltransf_25

Methyltransf_11

At2g29880_C

PF21137 ANM3_C2H2_Zf 90-140 aa PF06325 PrmA 299-344 aa PF13649 Methyltransf_25 304-343 aa PF08241 Methyltransf_11 306-364 aa PF24769 At2g29880_C 526-570 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790830.1`	Pfam	`PF21137`	ANM3_C2H2_Zf	Domain	90	140	6.2e-11	42.7	Protein arginine N-methyltransferase 3, C2H2 zinc finger domain
`XP_057790830.1`	Pfam	`PF06325`	PrmA	Family	299	344	1.4e-06	28.8	Ribosomal protein L11 methyltransferase (PrmA)
`XP_057790830.1`	Pfam	`PF13649`	Methyltransf_25	Domain	304	343	1.7e-06	29.3	Methyltransferase domain
`XP_057790830.1`	Pfam	`PF08241`	Methyltransf_11	Domain	306	364	6.9e-05	24.1	Methyltransferase domain
`XP_057790830.1`	Pfam	`PF24769`	At2g29880_C	Domain	526	570	2.3e-19	70.2	At2g29880 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934847.1
CTCCTCAGAAACACGAACCGAACCTTGAAATTAGGGTTTAGGGTTTAACAAATCTTGAACCTTGAAATTTTTTGCAACTGTGCTGAGCAAATGTCAATGGCGACGCACCAGGCGGAAGGCAATGGTAAACAAAACGACGAGCTACTGAACTCAATACTGCATTACACCGACTCCGAAGGTGACGAAGAAGAGTTGGAGGATGAGACTTGGGATGATTGGCATGACGAAGACGACGCCGGAGAGGAGGATTGTTCAAACCC...

CDS

1 records

下载 CDS FASTA

LOC131007936
ATGTCAATGGCGACGCACCAGGCGGAAGGCAATGGTAAACAAAACGACGAGCTACTGAACTCAATACTGCATTACACCGACTCCGAAGGTGACGAAGAAGAGTTGGAGGATGAGACTTGGGATGATTGGCATGACGAAGACGACGCCGGAGAGGAGGATTGTTCAAACCCTCAGATGCTCTGTCTCTTCTGTGACACACCGTTCAGTTCTTGCACTTCGCTCTTTGAGCACTGCGCATCGGCACACTTTTTTGATTTCTA...

Protein

1 records

下载 Protein FASTA

XP_057790830.1
MSMATHQAEGNGKQNDELLNSILHYTDSEGDEEELEDETWDDWHDEDDAGEEDCSNPQMLCLFCDTPFSSCTSLFEHCASAHFFDFYEIKKAYNLDFYQCLKLINYVRSQVAVNKRWSWEMAVNFDGNRFPWDDDTYLNPFLQDDPLLYSFDEDDVDEECDNMFADKNEMDSYLSQFEHIDLNEESFSDRGASEPIVPCDNGGKDGESSSHKDMTTAKPFESLAVDDTSYAAGGILSNRNGKNKMDTFPSSRIVAKEITD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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