当前解析结果
SmilChr02G000582| 统一新 Gene ID | SmilChr02G000582 |
|---|---|
| 名称 | SmilChr02G000582 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 8382701 - 8383882 / + |
| NCBI Gene ID | LOC131007946 |
|---|---|
| GeneID | 131007946 |
| locus_tag | - |
| NCBI Name | LOC131007946 |
| 原始查询 | SmilChr02G000582 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| Arabidopsis | AT3G47570 (AT3G47570)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=41; qcov=1.02; evalue=5.81e-82; confidence=medium |
| Rice | Os11g0695000- identity=44.4; qcov=1; evalue=9.61e-96; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007946 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790839.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057790839.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790839.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790839.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790839.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:8382703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A22,B6,C36,C63,D7 |
Chr2:8382745 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,C40 |
Chr2:8382753 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr2:8382771 |
G |
A |
EMS_canonical_SNV | stop_gained | 19 | A16,A21,B101,B20,B21,B28,B36,B49,B76,B88,B95,C30,C40,C45,C55,C58,C60,C8,D2 |
Chr2:8382773 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:8382774 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr2:8382788 |
A |
AAC |
2bp_insertion | frameshift_variant | 14 | A22,B102,B111,B135,B37,B6,C32,C36,C63,C68,C71,C72,D11,D7 |
Chr2:8382790 |
CAA |
C |
2bp_deletion | frameshift_variant | 14 | A22,B102,B111,B135,B37,B6,C32,C36,C63,C68,C71,C72,D11,D7 |
Chr2:8382851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C53,C64,C66 |
Chr2:8382893 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr2:8382932 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B26,C33,C43,C5 |
Chr2:8383018 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790839.1PF00560
LRR_1 76-98 aa
PF13855
LRR_8 76-135 aa
PF00560
LRR_1 100-122 aa
PF00069
Pkinase 243-390 aa
PF07714
PK_Tyr_Ser-Thr 246-390 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790839.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 76 | 98 | 4.7e-11 | 41.3 | Leucine Rich Repeat |
XP_057790839.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 76 | 135 | 1.8e-08 | 34.7 | Leucine rich repeat |
XP_057790839.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 100 | 122 | 4.7e-11 | 41.3 | Leucine Rich Repeat |
XP_057790839.1 |
Pfam | PF00069 |
Pkinase | Domain | 243 | 390 | 3.4e-25 | 89.7 | Protein kinase domain |
XP_057790839.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 246 | 390 | 1.9e-26 | 93.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。