当前解析结果
SmilChr02G000596| 统一新 Gene ID | SmilChr02G000596 |
|---|---|
| 名称 | SmilChr02G000596 |
| 描述 | NAD(P)H dehydrogenase (quinone) FQR1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 8605146 - 8607318 / + |
| NCBI Gene ID | LOC131012932 |
|---|---|
| GeneID | 131012932 |
| locus_tag | - |
| NCBI Name | LOC131012932 |
| 原始查询 | SmilChr02G000596 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NAD(P)H dehydrogenase (quinone) FQR1-like |
| 产物 | NAD(P)H dehydrogenase (quinone) FQR1-like |
| Arabidopsis | AT5G54500 (FQR1)flavodoxin-like quinone reductase 1 [Source:NCBI gene (formerly Entrezgene);Acc:835538] identity=81.2; qcov=0.864; evalue=5.16e-120; confidence=high |
| Rice | Os08g0139200- identity=79.1; qcov=0.882; evalue=6.91e-119; confidence=high |
| GO | GO:0003955 (NAD(P)H dehydrogenase (quinone) activity); GO:0010181 (FMN binding) |
| KEGG | smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00258 (Flavodoxin_1); PF02525 (Flavodoxin_2); PF03358 (FMN_red) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012932 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057796885.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057796885.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057796885.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796885.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796885.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:8605303 |
GAA |
G |
2bp_deletion | frameshift_variant | 4 | B101,B108,B82,C47 |
Chr2:8605303 |
GAA |
G |
2bp_deletion | CDS_variant | 4 | B101,B108,B82,C47 |
Chr2:8605323 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B117,B94,C14,D4 |
Chr2:8606171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr2:8606209 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C2,C32,C68 |
Chr2:8606334 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr2:8606409 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B28,B49,C40,C68 |
Chr2:8606420 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B128,B16,B41,C54,C57 |
Chr2:8606511 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr2:8606519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B130,B14,B72,C40 |
Chr2:8606965 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,C72 |
Chr2:8606971 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B130,B14,C26,C40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796885.1PF02525
Flavodoxin_2 29-152 aa
PF00258
Flavodoxin_1 32-156 aa
PF03358
FMN_red 40-170 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796885.1 |
Pfam | PF02525 |
Flavodoxin_2 | Domain | 29 | 152 | 5e-07 | 30.3 | Flavodoxin-like fold |
XP_057796885.1 |
Pfam | PF00258 |
Flavodoxin_1 | Domain | 32 | 156 | 1.1e-09 | 39.3 | Flavodoxin |
XP_057796885.1 |
Pfam | PF03358 |
FMN_red | Domain | 40 | 170 | 2e-14 | 54.2 | NADPH-dependent FMN reductase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。