当前解析结果
SmilChr02G000599| 统一新 Gene ID | SmilChr02G000599 |
|---|---|
| 名称 | SmilChr02G000599 |
| 描述 | uncharacterized mitochondrial protein AtMg00810-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 8642453 - 8644900 / + |
| NCBI Gene ID | LOC131007956 |
|---|---|
| GeneID | 131007956 |
| locus_tag | - |
| NCBI Name | LOC131007956 |
| 原始查询 | SmilChr02G000599 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0125300; species=rice; confidence=low |
| 产物 | hit=Os08g0125300; species=rice; confidence=low |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=29.6; qcov=0.922; evalue=1.31e-32; confidence=low |
| Rice | Os08g0125300- identity=33.3; qcov=0.873; evalue=7.76e-37; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007956 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057790848.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057790848.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790848.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790848.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790848.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:8642453 |
A |
AAT |
2bp_insertion | frameshift_variant | 10 | A25,B42,B43,B74,C31,C37,C57,C70,D7,D9 |
Chr2:8642454 |
TGG |
T |
2bp_deletion | frameshift_variant | 11 | A13,A25,B42,B43,B74,C31,C37,C57,C70,D7,D9 |
Chr2:8642482 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B51 |
Chr2:8642482 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B51 |
Chr2:8642484 |
TG |
T |
1bp_deletion | frameshift_variant | 97 | A10,A11,A13,A15,A16,A2,A23,A25,A9,B1,B10,B103,B104,B105,B106,B107,B114,B115,B118,B121,B123,B125,B130,B133,B135,B138,B14,B140,B16,B17,B18,B19,B23,B26,B29,B34,B35,B36,B42,B43,B5,B50,B53,B56,B60,B62,B66,B67,B68,B69,B72,B73,B75,B77,B8,B80,B84,B86,B9,B95,B98,C1,C10,C15,C18,C20,C22,C23,C25,C26,C28,C32,C33,C38,C39,C40,C41,C48,C49,C5,C50,C61,C63,C64,C66,C68,C7,C72,C74,C81,C84,C85,C86,C87,D10,D4,D9 |
Chr2:8642528 |
C |
T |
EMS_canonical_SNV | stop_gained | 35 | A10,A11,A24,A6,B104,B110,B111,B112,B125,B138,B139,B28,B46,B49,B52,B64,B78,B80,B85,B87,B91,B93,B98,C11,C14,C3,C34,C42,C50,C6,C62,C75,C8,C80,D3 |
Chr2:8642540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C33,C43,C46,C5 |
Chr2:8642550 |
TG |
T |
1bp_deletion | frameshift_variant | 9 | A16,B66,C26,C30,C33,C43,C46,C5,C8 |
Chr2:8642570 |
C |
T |
EMS_canonical_SNV | stop_gained | 25 | A11,A19,B1,B111,B112,B21,B58,B62,B63,B66,B7,B82,B91,B99,C1,C11,C23,C27,C3,C35,C52,C58,C69,C76,D8 |
Chr2:8642610 |
G |
A |
EMS_canonical_SNV | stop_gained | 115 | A1,A11,A13,A14,A18,A20,A21,A25,A5,A7,A8,A9,B102,B103,B104,B105,B106,B107,B111,B113,B12,B121,B122,B123,B127,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B140,B18,B2,B20,B25,B26,B28,B29,B33,B37,B4,B41,B55,B56,B59,B6,B63,B67,B68,B70,B75,B76,B78,B79,B81,B84,B85,B87,B89,B9,B91,B96,B97,B99,C12,C15,C18,C19,C24,C28,C3,C30,C31,C35,C36,C37,C39,C4,C41,C42,C45,C47,C5,C50,C52,C53,C56,C58,C59,C60,C64,C65,C66,C72,C74,C76,C77,C79,C8,C81,C82,C84,C85,C86,C87,C9,D11,D4,D7,D8 |
Chr2:8642611 |
G |
A |
EMS_canonical_SNV | stop_gained | 10 | B130,B4,B41,B70,B89,C15,C28,C47,C81,C82 |
Chr2:8642633 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B129,B92,C25,D11 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。