当前解析结果
SmilChr02G000600| 统一新 Gene ID | SmilChr02G000600 |
|---|---|
| 名称 | SmilChr02G000600 |
| 描述 | uncharacterized SmilChr02G000600 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 8665607 - 8669315 / - |
| NCBI Gene ID | LOC131012934 |
|---|---|
| GeneID | 131012934 |
| locus_tag | - |
| NCBI Name | LOC131012934 |
| 原始查询 | SmilChr02G000600 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Cysteine proteinases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840613]; symbol=AT1G37020; hit=AT1G37020; species=arabidopsis; confidence=weak |
| 产物 | Cysteine proteinases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840613]; symbol=AT1G37020; hit=AT1G37020; species=arabidopsis; confidence=weak |
| Arabidopsis | AT1G37020 (AT1G37020)Cysteine proteinases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840613] identity=26.3; qcov=0.275; evalue=3.43e-06; confidence=weak |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012934 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057796888.1 |
| 2 | Chromosome | 染色体 | 0.40000 | XP_057796888.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057796888.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057796888.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796888.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:8665762 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B138,B61,C23,C29,C8 |
Chr2:8665795 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,B34,B83 |
Chr2:8665884 |
CG |
C |
1bp_deletion | frameshift_variant | 7 | A11,B107,B127,B131,B44,B85,D4 |
Chr2:8665903 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B90,B92,C11,C69 |
Chr2:8665923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,C23,D7 |
Chr2:8665936 |
C |
CG |
1bp_insertion | frameshift_variant | 3 | B12,B55,C60 |
Chr2:8665936 |
C |
CG |
1bp_insertion | CDS_variant | 3 | B12,B55,C60 |
Chr2:8665996 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B90,B92,C11,C69 |
Chr2:8666095 |
G |
A |
EMS_canonical_SNV | stop_gained | 20 | A1,A15,A7,B11,B124,B135,B3,B33,B38,B61,B65,B66,B86,C27,C41,C55,C60,C69,C73,C75 |
Chr2:8666114 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr2:8666129 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr2:8666146 |
G |
A |
EMS_canonical_SNV | stop_gained | 18 | A19,B112,B34,B45,B5,B58,B63,B66,B70,B75,B82,B88,C63,C64,C66,C76,C86,D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。