Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000603`

染色体: Chr02 坐标: 8805790-8806808 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000603`
名称	SmilChr02G000603
描述	uncharacterized SmilChr02G000603
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	8805790 - 8806808 / `-`

ID 对照

NCBI Gene ID	`LOC131007959`
GeneID	`131007959`
locus_tag	`-`
NCBI Name	`LOC131007959`
原始查询	`SmilChr02G000603`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939]; symbol=AT1G66235; hit=AT1G66235; species=arabidopsis; confidence=low
产物	no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939]; symbol=AT1G66235; hit=AT1G66235; species=arabidopsis; confidence=low
Arabidopsis	`AT1G66235` (AT1G66235) no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939] identity=28.8; qcov=0.91; evalue=1.1e-26; confidence=low
Rice	`-` -
GO	-
KEGG	-
Pfam	PF14303 (NAM-associated)
InterPro	-
eggNOG	-
NR	GeneID:131007959

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790851.1`
2	Chromosome	染色体	0.00000	`XP_057790851.1`
3	Centromere	着丝粒	0.00000	`XP_057790851.1`
4	Chromatin	染色质	0.00000	`XP_057790851.1`
5	Telomere	端粒	0.00000	`XP_057790851.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:8805809`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B58,C24,C41
`Chr2:8805812`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B24,B43,B56,B83
`Chr2:8805813`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr2:8805842`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B126,C34
`Chr2:8805847`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr2:8805926`	`CT`	`C`	1bp_deletion	frameshift_variant	2	B58,C24
`Chr2:8805926`	`CT`	`C`	1bp_deletion	CDS_variant	2	B58,C24
`Chr2:8805953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr2:8805968`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C44,C7
`Chr2:8805969`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B59
`Chr2:8805969`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr2:8805981`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B32,B79,C35,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790851.1

290 aa

145

290

NAM-associated

PF14303 NAM-associated 74-242 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790851.1`	Pfam	`PF14303`	NAM-associated	Family	74	242	6.9e-17	63.5	No apical meristem-associated C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934868.1
ATGAAGATAAACATCTTTGTCGTGTGTATTTGGAGATATCTCAAGATTCAGAAACGGGAATACTCCAAAGAAAAGAAAAATTTTTGGGATCGTGTTAGGGAGGTTTACAACGAGGAGAAACCCAATCCAAATATGTATACTCGAAGTTCAAGATCACTTGAAACTCGCATGCAGTTCACTCGTGCAAAAGAATTGATGGTGCTAGACACAAAATATGAGAAAGGCTTCAAGTTCGAGCATGTGTGGTCTATTATGAAAGA...

CDS

1 records

下载 CDS FASTA

LOC131007959
ATGAAGATAAACATCTTTGTCGTGTGTATTTGGAGATATCTCAAGATTCAGAAACGGGAATACTCCAAAGAAAAGAAAAATTTTTGGGATCGTGTTAGGGAGGTTTACAACGAGGAGAAACCCAATCCAAATATGTATACTCGAAGTTCAAGATCACTTGAAACTCGCATGCAGTTCACTCGTGCAAAAGAATTGATGGTGCTAGACACAAAATATGAGAAAGGCTTCAAGTTCGAGCATGTGTGGTCTATTATGAAAGA...

Protein

1 records

下载 Protein FASTA

XP_057790851.1
MKINIFVVCIWRYLKIQKREYSKEKKNFWDRVREVYNEEKPNPNMYTRSSRSLETRMQFTRAKELMVLDTKYEKGFKFEHVWSIMKDYQKFDCPSQNSRQQMSASQSDSLPQSPISLDGLSNFSINLSDGSGSGSGSSDRPDGVKKTKNKRKKGEDMSNFLKVIEQGNKRIGDLMENSSTTKEQILQLQMQKIEAKNKATEAKKQAIAFQMWESDNKILMMDTDNISDPVRRDYFKSEQAKIIFKRQQHSSPYDAFNMFV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器