当前解析结果
SmilChr02G000614| 统一新 Gene ID | SmilChr02G000614 |
|---|---|
| 名称 | SmilChr02G000614 |
| 描述 | uncharacterized SmilChr02G000614 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 8955201 - 8959169 / + |
| NCBI Gene ID | LOC131007965 |
|---|---|
| GeneID | 131007965 |
| locus_tag | - |
| NCBI Name | LOC131007965 |
| 原始查询 | SmilChr02G000614 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | bZIP transcription factor, putative (DUF1664) [Source:NCBI gene (formerly Entrezgene);Acc:839042]; symbol=AT1G24267; hit=AT1G24267; species=arabidopsis; confidence=weak |
| 产物 | bZIP transcription factor, putative (DUF1664) [Source:NCBI gene (formerly Entrezgene);Acc:839042]; symbol=AT1G24267; hit=AT1G24267; species=arabidopsis; confidence=weak |
| Arabidopsis | AT1G24267 (AT1G24267)bZIP transcription factor, putative (DUF1664) [Source:NCBI gene (formerly Entrezgene);Acc:839042] identity=47.6; qcov=0.115; evalue=2.11e-07; confidence=weak |
| Rice | Os01g0100800- identity=27.5; qcov=0.249; evalue=9.07e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF07889 (DUF1664); PF13650 (Asp_protease_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007965 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057790856.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057790856.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057790856.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057790856.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057790856.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:8955229 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B16,B62,C15,C7 |
Chr2:8955269 |
GC |
* |
1bp_deletion | CDS_variant | 2 | B15,B22 |
Chr2:8955276 |
AAG |
* |
2bp_deletion | CDS_variant | 2 | B15,B22 |
Chr2:8955330 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,A9,B99 |
Chr2:8955346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C73,C77 |
Chr2:8955350 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C22,C78 |
Chr2:8955393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B136,C21,C80,D1 |
Chr2:8955423 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,A23,B24,B39,B59 |
Chr2:8955437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B119,C24,C35,D4 |
Chr2:8955438 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | A24 |
Chr2:8955438 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr2:8955458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B23,C28,C49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790856.1PF13650
Asp_protease_2 49-143 aa
PF07889
DUF1664 302-337 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790856.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 49 | 143 | 3.1e-07 | 31.7 | Aspartyl protease |
XP_057790856.1 |
Pfam | PF07889 |
DUF1664 | Coiled-coil | 302 | 337 | 8.7e-11 | 42.6 | Protein of unknown function (DUF1664) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。