Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000630`

染色体: Chr02 坐标: 9504658-9510630 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000630`
名称	SmilChr02G000630
描述	homeobox-leucine zipper protein MERISTEM L1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	9504658 - 9510630 / `-`

ID 对照

NCBI Gene ID	`LOC131012943`
GeneID	`131012943`
locus_tag	`-`
NCBI Name	`LOC131012943`
原始查询	`SmilChr02G000630`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	homeobox-leucine zipper protein MERISTEM L1-like
产物	homeobox-leucine zipper protein MERISTEM L1-like
Arabidopsis	`AT4G21750` (ATML1) Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828263] identity=76.9; qcov=1.06; evalue=0; confidence=high
Rice	`Os08g0187500` (Roc1(t)) - identity=77.3; qcov=0.981; evalue=0; confidence=high
GO	GO:0003677 (DNA binding); GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00046 (Homeodomain); PF01852 (START); PF25797 (PDF2_C)
InterPro	-
eggNOG	-
NR	GeneID:131012943

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796901.1`
2	Chromosome	染色体	0.00000	`XP_057796901.1`
3	Centromere	着丝粒	0.00000	`XP_057796901.1`
4	Chromatin	染色质	0.00000	`XP_057796901.1`
5	Telomere	端粒	0.00000	`XP_057796901.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:9505847`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr2:9505856`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr2:9505881`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr2:9505935`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B40,C78
`Chr2:9506717`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr2:9506723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr2:9506826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:9507619`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B40,C78,D5
`Chr2:9507688`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr2:9508636`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B95,C14
`Chr2:9509176`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B66,C26
`Chr2:9509222`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796901.1

722 aa

361

722

Homeodomain

START

PDF2_C

PF00046 Homeodomain 58-113 aa PF01852 START 247-466 aa PF25797 PDF2_C 485-716 aa

XP_057796902.1

722 aa

361

722

Homeodomain

START

PDF2_C

PF00046 Homeodomain 58-113 aa PF01852 START 247-466 aa PF25797 PDF2_C 485-716 aa

XP_057796903.1

722 aa

361

722

Homeodomain

START

PDF2_C

PF00046 Homeodomain 58-113 aa PF01852 START 247-466 aa PF25797 PDF2_C 485-716 aa

XP_057796904.1

722 aa

361

722

Homeodomain

START

PDF2_C

PF00046 Homeodomain 58-113 aa PF01852 START 247-466 aa PF25797 PDF2_C 485-716 aa

XP_057796905.1

722 aa

361

722

Homeodomain

START

PDF2_C

PF00046 Homeodomain 58-113 aa PF01852 START 247-466 aa PF25797 PDF2_C 485-716 aa

XP_057796906.1

722 aa

361

722

Homeodomain

START

PDF2_C

PF00046 Homeodomain 58-113 aa PF01852 START 247-466 aa PF25797 PDF2_C 485-716 aa

XP_057796907.1

722 aa

361

722

Homeodomain

START

PDF2_C

PF00046 Homeodomain 58-113 aa PF01852 START 247-466 aa PF25797 PDF2_C 485-716 aa

XP_057796908.1

722 aa

361

722

Homeodomain

START

PDF2_C

PF00046 Homeodomain 58-113 aa PF01852 START 247-466 aa PF25797 PDF2_C 485-716 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796901.1`	Pfam	`PF00046`	Homeodomain	Domain	58	113	3e-18	66.1	Homeodomain
`XP_057796901.1`	Pfam	`PF01852`	START	Domain	247	466	1.2e-53	182.3	START domain
`XP_057796901.1`	Pfam	`PF25797`	PDF2_C	Domain	485	716	4.3e-99	331.2	PDF2-like, C-terminal domain
`XP_057796902.1`	Pfam	`PF00046`	Homeodomain	Domain	58	113	3e-18	66.1	Homeodomain
`XP_057796902.1`	Pfam	`PF01852`	START	Domain	247	466	1.2e-53	182.3	START domain
`XP_057796902.1`	Pfam	`PF25797`	PDF2_C	Domain	485	716	4.3e-99	331.2	PDF2-like, C-terminal domain
`XP_057796903.1`	Pfam	`PF00046`	Homeodomain	Domain	58	113	3e-18	66.1	Homeodomain
`XP_057796903.1`	Pfam	`PF01852`	START	Domain	247	466	1.2e-53	182.3	START domain
`XP_057796903.1`	Pfam	`PF25797`	PDF2_C	Domain	485	716	4.3e-99	331.2	PDF2-like, C-terminal domain
`XP_057796904.1`	Pfam	`PF00046`	Homeodomain	Domain	58	113	3e-18	66.1	Homeodomain
`XP_057796904.1`	Pfam	`PF01852`	START	Domain	247	466	1.2e-53	182.3	START domain
`XP_057796904.1`	Pfam	`PF25797`	PDF2_C	Domain	485	716	4.3e-99	331.2	PDF2-like, C-terminal domain
`XP_057796905.1`	Pfam	`PF00046`	Homeodomain	Domain	58	113	3e-18	66.1	Homeodomain
`XP_057796905.1`	Pfam	`PF01852`	START	Domain	247	466	1.2e-53	182.3	START domain
`XP_057796905.1`	Pfam	`PF25797`	PDF2_C	Domain	485	716	4.3e-99	331.2	PDF2-like, C-terminal domain
`XP_057796906.1`	Pfam	`PF00046`	Homeodomain	Domain	58	113	3e-18	66.1	Homeodomain
`XP_057796906.1`	Pfam	`PF01852`	START	Domain	247	466	1.2e-53	182.3	START domain
`XP_057796906.1`	Pfam	`PF25797`	PDF2_C	Domain	485	716	4.3e-99	331.2	PDF2-like, C-terminal domain
`XP_057796907.1`	Pfam	`PF00046`	Homeodomain	Domain	58	113	3e-18	66.1	Homeodomain
`XP_057796907.1`	Pfam	`PF01852`	START	Domain	247	466	1.2e-53	182.3	START domain
`XP_057796907.1`	Pfam	`PF25797`	PDF2_C	Domain	485	716	4.3e-99	331.2	PDF2-like, C-terminal domain
`XP_057796908.1`	Pfam	`PF00046`	Homeodomain	Domain	58	113	3e-18	66.1	Homeodomain
`XP_057796908.1`	Pfam	`PF01852`	START	Domain	247	466	1.2e-53	182.3	START domain
`XP_057796908.1`	Pfam	`PF25797`	PDF2_C	Domain	485	716	4.3e-99	331.2	PDF2-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057940923.1
TAATGCCATCGCACCCTCTCTATACGCTCTGCAATAACTCCTCGGCTGCCATATCTTCTCCACCTGTTCCCTTTTCCCTTCTTCACCTTCCCATCACCCTCTCCAAACCTCTCTCTCTCTCTTGATTCTCATCGTCCGATCCTTTCTCTCTCATCCTCTCATATCCCAACCATTCTTCTTAAATTCTATTCACAAGAAAGGCACACCGTCAATAAAAACCTTAAAACCAACTCCTTTCAACACCAAGAATCGCTTTTTCC...

XM_057940925.1
CCATCGCACCCTCTCTATACGCTCTGCAATAACTCCTCGGCTGCCATATCTTCTCCACCTGTTCCCTTTTCCCTTCTTCACCTTCCCATCACCCTCTCCAAACCTCTCTCTCTCTCTTGATTCTCATCGTCCGATCCTTTCTCTCTCATCCTCTCATATCCCAACCATTCTTCTTAAATTCTATTCACAAGAAAGGCACACCGTCAATAAAAACCTTAAAACCAACTCCTTTCAACACCAAGAATCGCTTTTTCCTCTTC...

CDS

8 records

下载 CDS FASTA

LOC131012943
ATGTTTCAACCAAATATGTTTGAGAGCCACCACCATTTACTGGAAATGGGGAATAAAACCCCAGAAAATGATATGGACCTTATCCGCGACGACGACTACGAGAGCAAGTCCGGCACCGACAACATGGAGGCGGCCTCCGGCGACGATCAGGACCCCAACGACCGCCCCAAGAAGAAGCGCTACCACCGCCACACCCAACATCAGATTCAAGAAATGGAATCGTTTTTCAAGGAGTGCCCTCACCCCGACGACAAGCAGAG...

Protein

8 records

下载 Protein FASTA

XP_057796901.1
MFQPNMFESHHHLLEMGNKTPENDMDLIRDDDYESKSGTDNMEAASGDDQDPNDRPKKKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMKSQHERHENTQLRNENEKLRAENIRYKEALGNATCPNCGGPAAIGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPMLSYPQLSSGASRSLDLGVGSFGANTGLSGEIFGASDLLRSVSGPSDADKPIIIELAVAAMEELIRMAQ...

XP_057796902.1
MFQPNMFESHHHLLEMGNKTPENDMDLIRDDDYESKSGTDNMEAASGDDQDPNDRPKKKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMKSQHERHENTQLRNENEKLRAENIRYKEALGNATCPNCGGPAAIGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPMLSYPQLSSGASRSLDLGVGSFGANTGLSGEIFGASDLLRSVSGPSDADKPIIIELAVAAMEELIRMAQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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