当前解析结果
SmilChr02G000644| 统一新 Gene ID | SmilChr02G000644 |
|---|---|
| 名称 | SmilChr02G000644 |
| 描述 | uncharacterized SmilChr02G000644 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 9724364 - 9725068 / - |
| NCBI Gene ID | LOC131007972 |
|---|---|
| GeneID | 131007972 |
| locus_tag | - |
| NCBI Name | LOC131007972 |
| 原始查询 | SmilChr02G000644 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0204200; species=rice; confidence=low |
| 产物 | hit=Os04g0204200; species=rice; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=26.1; qcov=0.509; evalue=1.01e-08; confidence=low |
| Rice | Os04g0204200- identity=29.8; qcov=0.718; evalue=1.15e-13; confidence=low |
| GO | GO:0003906 (DNA-(apurinic or apyrimidinic site) endonuclease activity); GO:0005634 (nucleus); GO:0006284 (base-excision repair); GO:0008081 (phosphoric diester hydrolase activity); GO:0008311 (double-stranded DNA 3'-5' DNA exonuclease activity) |
| KEGG | - |
| Pfam | PF03372 (Exo_endo_phos); PF14529 (Exo_endo_phos_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007972 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057790862.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057790862.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057790862.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790862.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790862.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:9724378 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:9724382 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B47 |
Chr2:9724393 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr2:9724414 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr2:9724437 |
G |
GA |
1bp_insertion | frameshift_variant | 3 | A21,B122,B19 |
Chr2:9724437 |
G |
GA |
1bp_insertion | CDS_variant | 3 | A21,B122,B19 |
Chr2:9724452 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,C26,C43,C46 |
Chr2:9724459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,B111,B134,B3,B31 |
Chr2:9724468 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:9724511 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B91,C33 |
Chr2:9724517 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr2:9724525 |
G |
A |
EMS_canonical_SNV | stop_gained | 48 | A14,A16,A19,A22,A24,B101,B105,B108,B115,B119,B123,B124,B131,B132,B133,B134,B14,B15,B22,B34,B37,B38,B39,B41,B42,B43,B45,B51,B52,B58,B62,B70,B73,B8,B83,B86,B87,B88,B98,C24,C33,C53,C59,C63,C71,C75,C83,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790862.1PF03372
Exo_endo_phos 4-227 aa
PF14529
Exo_endo_phos_2 105-230 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790862.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 4 | 227 | 1.1e-12 | 48.9 | Endonuclease/Exonuclease/phosphatase family |
XP_057790862.1 |
Pfam | PF14529 |
Exo_endo_phos_2 | Domain | 105 | 230 | 8e-10 | 39.3 | Endonuclease-reverse transcriptase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。