Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000650`

染色体: Chr02 坐标: 9840881-9842233 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000650`
名称	SmilChr02G000650
描述	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	9840881 - 9842233 / `-`

ID 对照

NCBI Gene ID	`LOC131013666`
GeneID	`131013666`
locus_tag	`-`
NCBI Name	`LOC131013666`
原始查询	`SmilChr02G000650`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At1g61870%2C mitochondrial-like
Arabidopsis	`AT1G61870` (PPR336) pentatricopeptide repeat 336 [Source:NCBI gene (formerly Entrezgene);Acc:842484] identity=52; qcov=1.03; evalue=2.19e-148; confidence=high
Rice	`Os01g0793200` - identity=48.9; qcov=0.957; evalue=4.31e-124; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long)
InterPro	-
eggNOG	-
NR	GeneID:131013666

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057797775.1`
2	Nucleus	细胞核	0.00000	`XP_057797775.1`
3	Chromosome	染色体	0.00000	`XP_057797775.1`
4	Centromere	着丝粒	0.00000	`XP_057797775.1`
5	Chromatin	染色质	0.00000	`XP_057797775.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:9841087`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr2:9841098`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr2:9841217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B8,B82
`Chr2:9841388`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B106,C71
`Chr2:9841475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr2:9841646`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B33,B46,C60
`Chr2:9841825`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr2:9841826`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr2:9841864`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:9841865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B33,C24
`Chr2:9841874`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr2:9841887`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C34,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797775.1

395 aa

198

395

PPR

PPR_long

PPR_3

PPR_1

PPR_3

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_2

PPR

PF01535 PPR 108-133 aa PF17177 PPR_long 118-237 aa PF13812 PPR_3 123-183 aa PF12854 PPR_1 169-200 aa PF13812 PPR_3 169-215 aa PF13041 PPR_2 171-220 aa PF01535 PPR 175-204 aa PF13812 PPR_3 194-248 aa PF13041 PPR_2 245-290 aa PF01535 PPR 246-273 aa PF13812 PPR_3 264-316 aa PF12854 PPR_1 273-305 aa PF01535 PPR 280-308 aa PF13041 PPR_2 280-325 aa PF01535 PPR 350-377 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797775.1`	Pfam	`PF01535`	PPR	Repeat	108	133	4.9e-34	114.9	PPR repeat
`XP_057797775.1`	Pfam	`PF17177`	PPR_long	Repeat	118	237	1.3e-14	54.8	Pentacotripeptide-repeat region of PRORP
`XP_057797775.1`	Pfam	`PF13812`	PPR_3	Repeat	123	183	1e-27	96.7	Pentatricopeptide repeat domain
`XP_057797775.1`	Pfam	`PF12854`	PPR_1	Repeat	169	200	1.3e-35	121.5	PPR repeat
`XP_057797775.1`	Pfam	`PF13812`	PPR_3	Repeat	169	215	1e-27	96.7	Pentatricopeptide repeat domain
`XP_057797775.1`	Pfam	`PF13041`	PPR_2	Repeat	171	220	5.2e-46	155.3	PPR repeat family
`XP_057797775.1`	Pfam	`PF01535`	PPR	Repeat	175	204	4.9e-34	114.9	PPR repeat
`XP_057797775.1`	Pfam	`PF13812`	PPR_3	Repeat	194	248	1e-27	96.7	Pentatricopeptide repeat domain
`XP_057797775.1`	Pfam	`PF13041`	PPR_2	Repeat	245	290	5.2e-46	155.3	PPR repeat family
`XP_057797775.1`	Pfam	`PF01535`	PPR	Repeat	246	273	4.9e-34	114.9	PPR repeat
`XP_057797775.1`	Pfam	`PF13812`	PPR_3	Repeat	264	316	1e-27	96.7	Pentatricopeptide repeat domain
`XP_057797775.1`	Pfam	`PF12854`	PPR_1	Repeat	273	305	1.3e-35	121.5	PPR repeat
`XP_057797775.1`	Pfam	`PF01535`	PPR	Repeat	280	308	4.9e-34	114.9	PPR repeat
`XP_057797775.1`	Pfam	`PF13041`	PPR_2	Repeat	280	325	5.2e-46	155.3	PPR repeat family
`XP_057797775.1`	Pfam	`PF01535`	PPR	Repeat	350	377	4.9e-34	114.9	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941792.1
ATGGCGTTACGCAGCAAGCTCCGATCACTGACCCTCCGGCGCTTCTCCACCTCAATCCTGAGCCCGGACTCCAAAACCCCGCTCACCAGCAAAGAGAAATCGCGCGCCGCCCTCTCCCTCCTCCGCTTCGAGAGCAACCCGGAGCGCGTCCTCGACATCTGCCGCGCCGCCGCCCTCACCCCCGACACGCACCTCGACCGCGTCGCCTACTCGCAGGCCATCACCAAGCTCAAGAAGTCCCACTACTACGAGGGAATCCG...

CDS

1 records

下载 CDS FASTA

LOC131013666
ATGGCGTTACGCAGCAAGCTCCGATCACTGACCCTCCGGCGCTTCTCCACCTCAATCCTGAGCCCGGACTCCAAAACCCCGCTCACCAGCAAAGAGAAATCGCGCGCCGCCCTCTCCCTCCTCCGCTTCGAGAGCAACCCGGAGCGCGTCCTCGACATCTGCCGCGCCGCCGCCCTCACCCCCGACACGCACCTCGACCGCGTCGCCTACTCGCAGGCCATCACCAAGCTCAAGAAGTCCCACTACTACGAGGGAATCCG...

Protein

1 records

下载 Protein FASTA

XP_057797775.1
MALRSKLRSLTLRRFSTSILSPDSKTPLTSKEKSRAALSLLRFESNPERVLDICRAAALTPDTHLDRVAYSQAITKLKKSHYYEGIRSFITDSLARPDLKSERSVSHFIVLYGQAGLVKDAVKLFEEMRQYGVAQNVKSLNALLISCIMAREYGEMKRIFTDFPAKYSLEPDLDTYNTVLKGFCESGSSNSAYSVLSEMERKGIQPNATTFSVVVAGFYKEEKLGDVEKVAEVMKKFGVKHGLGVYNAKIQSLCKLKKSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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