Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000660`

染色体: Chr02 坐标: 10033605-10042153 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000660`
名称	SmilChr02G000660
描述	calcium-dependent protein kinase 2-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	10033605 - 10042153 / `-`

ID 对照

NCBI Gene ID	`LOC131013672`
GeneID	`131013672`
locus_tag	`-`
NCBI Name	`LOC131013672`
原始查询	`SmilChr02G000660`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcium-dependent protein kinase 2-like
产物	calcium-dependent protein kinase 2-like
Arabidopsis	`AT4G04720` (CPK21) calcium-dependent protein kinase 21 [Source:NCBI gene (formerly Entrezgene);Acc:825807] identity=74.4; qcov=0.998; evalue=0; confidence=high
Rice	`Os07g0515100` (OsCDPK19) calcium-dependent protein kinase 19-like [Source:NCBI gene (formerly Entrezgene);Acc:4343373] identity=72.6; qcov=1.01; evalue=0; confidence=high
GO	GO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005509 (calcium ion binding); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8); PF14531 (Kinase-like)
InterPro	-
eggNOG	-
NR	GeneID:131013672

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057797787.1`
2	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057797787.1`
3	Trans-golgi network	Trans-golgi network	0.20000	`XP_057797787.1`
4	Nucleus	细胞核	0.00000	`XP_057797787.1`
5	Chromosome	染色体	0.00000	`XP_057797787.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:10034733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr2:10041186`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,B135
`Chr2:10041289`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,D5
`Chr2:10041303`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,A4,B1,B117,C49
`Chr2:10041315`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B35,C85
`Chr2:10041435`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B139,B24,B84,C8,C81
`Chr2:10041631`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C30,C60
`Chr2:10041661`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:10041672`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C71,C74
`Chr2:10041685`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B37,B50,C27,C63
`Chr2:10041702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,C71,C74
`Chr2:10041777`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797787.1

537 aa

268

537

Pkinase

PK_Tyr_Ser-Thr

Kinase-like

EF-hand_7

EF-hand_5

EF-hand_1

EF-hand_8

EF-hand_5

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_5

EF-hand_1

PF00069 Pkinase 91-349 aa PF07714 PK_Tyr_Ser-Thr 93-344 aa PF14531 Kinase-like 191-337 aa PF13499 EF-hand_7 394-455 aa PF13202 EF-hand_5 395-417 aa PF00036 EF-hand_1 395-421 aa PF13833 EF-hand_8 407-454 aa PF13202 EF-hand_5 432-452 aa PF13499 EF-hand_7 465-527 aa PF00036 EF-hand_1 467-493 aa PF13405 EF-hand_6 467-495 aa PF13202 EF-hand_5 469-489 aa PF13833 EF-hand_8 479-527 aa PF13202 EF-hand_5 502-522 aa PF00036 EF-hand_1 502-528 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797787.1`	Pfam	`PF00069`	Pkinase	Domain	91	349	1.5e-77	261.3	Protein kinase domain
`XP_057797787.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	93	344	3e-29	102.8	Protein tyrosine and serine/threonine kinase
`XP_057797787.1`	Pfam	`PF14531`	Kinase-like	Family	191	337	1.7e-06	28.3	Kinase-like
`XP_057797787.1`	Pfam	`PF13499`	EF-hand_7	Domain	394	455	5.3e-32	110.7	EF-hand domain pair
`XP_057797787.1`	Pfam	`PF13202`	EF-hand_5	Domain	395	417	1.7e-23	81.6	EF hand
`XP_057797787.1`	Pfam	`PF00036`	EF-hand_1	Domain	395	421	5.5e-34	113.9	EF hand domain
`XP_057797787.1`	Pfam	`PF13833`	EF-hand_8	Domain	407	454	2.3e-17	63.2	EF-hand domain pair
`XP_057797787.1`	Pfam	`PF13202`	EF-hand_5	Domain	432	452	1.7e-23	81.6	EF hand
`XP_057797787.1`	Pfam	`PF13499`	EF-hand_7	Domain	465	527	5.3e-32	110.7	EF-hand domain pair
`XP_057797787.1`	Pfam	`PF00036`	EF-hand_1	Domain	467	493	5.5e-34	113.9	EF hand domain
`XP_057797787.1`	Pfam	`PF13405`	EF-hand_6	Domain	467	495	4.4e-26	88.8	EF-hand domain
`XP_057797787.1`	Pfam	`PF13202`	EF-hand_5	Domain	469	489	1.7e-23	81.6	EF hand
`XP_057797787.1`	Pfam	`PF13833`	EF-hand_8	Domain	479	527	2.3e-17	63.2	EF-hand domain pair
`XP_057797787.1`	Pfam	`PF13202`	EF-hand_5	Domain	502	522	1.7e-23	81.6	EF hand
`XP_057797787.1`	Pfam	`PF00036`	EF-hand_1	Domain	502	528	5.5e-34	113.9	EF hand domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941804.1
AAACAAATCTAATATTTAAATAGTGTTGAAAGTCATTGAAGCAAAGTGAAAAAGCTAAAACCGTGTATAAAACACTTCGCCAGCACCTCGTGAGAAGTCAACACAGACAGTGGTCTGTGAATTTCTCTCATCTGCTGCAAAACGCCACCAACACATTCCCATTCAAATCGCTTCAATTTTGCGCCCACGATTCCATCTCTTTATTCTCAAAGCTTGGAATCTTCCTCACACCCCCGCCGCGCATATACCAATTTCCGTAG...

CDS

1 records

下载 CDS FASTA

LOC131013672
ATGGGCGGTTGCTTCAGCAAGAAAAATCACTCTAGCCCAGCCGCCAATGGCTACGGATCCGCAGCGGGGGGCAGCGCAGGGTACCAACAAATCAACCAGGATTACCAAAAACCGGCTGCCCAACACCACCCGCCGCCGCAAACTCATCACGCGCCGCCGCCGCCGAAGCCCACGCCCCAGCCGCAGCCGCAGCCCCAGACCGCCGCAGCAGCTCAGAGATTGGAGCACAACAACATTCTCGGAAAGCCCTTCGAGGATTT...

Protein

1 records

下载 Protein FASTA

XP_057797787.1
MGGCFSKKNHSSPAANGYGSAAGGSAGYQQINQDYQKPAAQHHPPPQTHHAPPPPKPTPQPQPQPQTAAAAQRLEHNNILGKPFEDLKSKYSVGKELGRGQFGVTYMCTEIATGHNYACKSILKRKLVSKSDKEDMKREVDIMQHLSGQHNIVEFKGAFEDRQTVHLIMEVCRGGELFDSIIAQGHYSERAASDLCRQIVNVVHHCHFMGVMHRDLKPENFLLSSKDDKATLKATDFGLSVFIEEGKVYRDIVGSAYYVA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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