Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr02G000670`

Chromosome: Chr02 Coordinates: 10339992-10340971 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr02G000670`
Name	SmilChr02G000670
Description	uncharacterized SmilChr02G000670
Chromosome / SeqID	Chr02 / NC_080388.1
Coordinates and Strand	10339992 - 10340971 / `+`

ID Mapping

NCBI Gene ID	`LOC131007981`
GeneID	`131007981`
locus_tag	`-`
NCBI Name	`LOC131007981`
Original query	`SmilChr02G000670`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; Arabidopsis/Rice homolog
Description	confidence=no_hit
Product	confidence=no_hit
Arabidopsis	`-` -
Rice	`-` -
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131007981

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057790871.1`
2	Nucleus	细胞核	0.60000	`XP_057790871.1`
3	Chromosome	染色体	0.00000	`XP_057790871.1`
4	Centromere	着丝粒	0.00000	`XP_057790871.1`
5	Chromatin	染色质	0.00000	`XP_057790871.1`

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr2:10339994`	`G`	`GAC`	2bp_insertion	frameshift_variant	24	A15,A25,A8,B109,B128,B129,B136,B138,B139,B16,B29,B47,B51,B53,B72,C13,C18,C21,C3,C37,C44,C74,C76,C86
`Chr2:10340034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B56,C52,C62
`Chr2:10340041`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr2:10340120`	`TG`	`T`	1bp_deletion	frameshift_variant	50	A13,A19,A4,A5,B1,B100,B103,B112,B113,B115,B120,B126,B127,B134,B135,B137,B17,B18,B2,B22,B27,B28,B35,B37,B45,B51,B61,B63,B7,B74,B79,B83,B85,B90,C12,C17,C25,C31,C39,C40,C41,C46,C47,C53,C54,C71,C86,C9,D6,D8
`Chr2:10340172`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B135,B18,C70
`Chr2:10340232`	`G`	`GA`	1bp_insertion	frameshift_variant	83	A1,A11,A14,A16,A2,A20,A23,A24,A3,A5,A7,A8,B108,B109,B112,B115,B119,B122,B128,B129,B131,B15,B17,B2,B21,B25,B26,B32,B33,B38,B39,B4,B42,B43,B48,B49,B5,B55,B59,B60,B67,B68,B70,B75,B76,B77,B78,B9,B93,B97,B98,B99,C10,C13,C16,C18,C19,C2,C22,C24,C25,C3,C33,C36,C38,C40,C43,C44,C47,C5,C55,C60,C61,C62,C64,C66,C70,C72,C74,C78,C84,C86,D7
`Chr2:10340242`	`TGA`	`T`	2bp_deletion	frameshift_variant	7	A1,A23,B70,B76,B98,C5,C55
`Chr2:10340291`	`G`	`A`	EMS_canonical_SNV	stop_gained	17	A19,B1,B111,B113,B134,B135,B137,B35,B41,B61,B7,B74,B79,B83,C28,C39,C86
`Chr2:10340348`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:10340375`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C22
`Chr2:10340375`	`AG`	`A`	1bp_deletion	CDS_variant	1	C22
`Chr2:10340422`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35

Open EMS variants

Predicted Protein Domains

This gene has no available Pfam domain hit in the current release.

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cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057934888.1
ATGGATAGAGAGATCTTGGATCCTCGACAGGAAAGACCTCAACTGATCAGAGAGTTAGGCCGTCATAGAAACAATTACCCTTTGTGTATTGTCCTTCCTGCCATTAATGGCAACGCTGAAATACTGCCTGGTTTCATTCAAGTGCTAACCAAGTTCGGTGATTTACCTGGAGAAAGTGCACACAAGCATCTCGCTGAATTTGATCTAGTTTGCTCAACTCTACGCCCTCATGGTTTTACTGAAAATAACTTGAGGCTATT...

CDS

1 records

Download CDS FASTA

LOC131007981
ATGGATAGAGAGATCTTGGATCCTCGACAGGAAAGACCTCAACTGATCAGAGAGTTAGGCCGTCATAGAAACAATTACCCTTTGTGTATTGTCCTTCCTGCCATTAATGGCAACGCTGAAATACTGCCTGGTTTCATTCAAGTGCTAACCAAGTTCGGTGATTTACCTGGAGAAAGTGCACACAAGCATCTCGCTGAATTTGATCTAGTTTGCTCAACTCTACGCCCTCATGGTTTTACTGAAAATAACTTGAGGCTATT...

Protein

1 records

Download Protein FASTA

XP_057790871.1
MDREILDPRQERPQLIRELGRHRNNYPLCIVLPAINGNAEILPGFIQVLTKFGDLPGESAHKHLAEFDLVCSTLRPHGFTENNLRLLTFSHTLQGRARDWLFDLPPGSIRTWGDLEEQFLRKFFPESRAANLRMAISSIKQKKAESLADYWERFQQLCRKCPDHGFSDYQLKIVDAACGGSLTNKTLDEAKQLIIDMVSNGQQYEDEDDDDDRYRPVQKAEDSSVNEKIDAITSLFRGLDDNNVEQACMGSADEQEMNAQ...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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