当前解析结果
SmilChr02G000673| 统一新 Gene ID | SmilChr02G000673 |
|---|---|
| 名称 | SmilChr02G000673 |
| 描述 | cytochrome P450 716B1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 10399954 - 10401936 / - |
| NCBI Gene ID | LOC131013682 |
|---|---|
| GeneID | 131013682 |
| locus_tag | - |
| NCBI Name | LOC131013682 |
| 原始查询 | SmilChr02G000673 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 716B1-like |
| 产物 | cytochrome P450 716B1-like |
| Arabidopsis | AT5G36110 (CYP716A1)cytochrome P450, family 716, subfamily A, polypeptide 1 [Source:NCBI gene (formerly Entrezgene);Acc:833607] identity=34.8; qcov=0.928; evalue=8.2e-101; confidence=low |
| Rice | Os07g0520300 (OJ1793_E11.119)- identity=50.3; qcov=0.954; evalue=8.76e-161; confidence=high |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016125 (sterol metabolic process); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013682 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057797793.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057797793.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057797793.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797793.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797793.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:10400104 |
C |
T |
EMS_canonical_SNV | stop_gained | 20 | B100,B115,B120,B122,B124,B22,B7,B85,B96,C25,C27,C30,C46,C47,C5,C54,C60,C84,C9,D2 |
Chr2:10400209 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B119,B42 |
Chr2:10400248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr2:10400254 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr2:10400291 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A22,B67 |
Chr2:10401006 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr2:10401390 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B29,B50,C27,D9 |
Chr2:10401444 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,B84 |
Chr2:10401456 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr2:10401616 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:10401629 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr2:10401800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,B139,B84,C37,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057797793.1PF00067
p450 30-460 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797793.1 |
Pfam | PF00067 |
p450 | Domain | 30 | 460 | 1.5e-67 | 229.1 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。