当前解析结果
SmilChr02G000675| 统一新 Gene ID | SmilChr02G000675 |
|---|---|
| 名称 | SmilChr02G000675 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 10484734 - 10486782 / - |
| NCBI Gene ID | LOC131007982 |
|---|---|
| GeneID | 131007982 |
| locus_tag | - |
| NCBI Name | LOC131007982 |
| 原始查询 | SmilChr02G000675 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=29.6; qcov=1.08; evalue=1.56e-63; confidence=low |
| Rice | Os07g0186500- identity=30.6; qcov=1.05; evalue=2.27e-67; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007982 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057790872.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057790872.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057790872.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790872.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790872.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:10484742 |
GA |
G |
1bp_deletion | frameshift_variant | 11 | B102,B107,B14,B23,B30,C13,C34,C36,C40,D1,D9 |
Chr2:10484884 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | C23,C87 |
Chr2:10484884 |
AT |
A |
1bp_deletion | CDS_variant | 2 | C23,C87 |
Chr2:10484956 |
G |
GCT |
2bp_insertion | frameshift_variant | 31 | A20,A21,A8,B104,B108,B111,B121,B130,B133,B3,B34,B41,B61,B62,B73,B75,B78,B79,B83,B94,B97,C27,C32,C36,C40,C56,C80,C83,C87,D11,D2 |
Chr2:10484959 |
C |
CT |
1bp_insertion | stop_gained,frameshift_variant | 1 | C15 |
Chr2:10484959 |
C |
CT |
1bp_insertion | CDS_variant | 1 | C15 |
Chr2:10484966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr2:10484976 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A22,B6,C33,C63 |
Chr2:10484999 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B11,C78,D5 |
Chr2:10485001 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,B74 |
Chr2:10485089 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr2:10485103 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A22,B53,B67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790872.1PF00931
NB-ARC 18-176 aa
PF23559
WHD_DRP 263-332 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790872.1 |
Pfam | PF00931 |
NB-ARC | Domain | 18 | 176 | 3.9e-37 | 128.2 | NB-ARC domain |
XP_057790872.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 263 | 332 | 2e-15 | 57.3 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。