当前解析结果
SmilChr02G000681| 统一新 Gene ID | SmilChr02G000681 |
|---|---|
| 名称 | SmilChr02G000681 |
| 描述 | chalcone synthase-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 10718197 - 10742299 / - |
| NCBI Gene ID | LOC131013687 |
|---|---|
| GeneID | 131013687 |
| locus_tag | - |
| NCBI Name | LOC131013687 |
| 原始查询 | SmilChr02G000681 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | chalcone synthase-like |
| 产物 | chalcone synthase-like |
| Arabidopsis | AT5G13930 (TT4)Chalcone and stilbene synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831241] identity=67.9; qcov=0.907; evalue=0; confidence=high |
| Rice | Os11g0530600 (CHS*)- identity=66.8; qcov=0.904; evalue=0; confidence=high |
| GO | GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups); GO:0030639 (polyketide biosynthetic process) |
| KEGG | smil00941 (Flavonoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04712 (Circadian rhythm - plant - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00195 (Chal_sti_synt_N); PF02797 (Chal_sti_synt_C); PF08545 (ACP_syn_III) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013687 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057797796.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057797796.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057797796.1 |
| 4 | Lipid droplet | 脂滴 | 0.20000 | XP_057797796.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057797796.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:10718781 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr2:10718799 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,B138 |
Chr2:10718806 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr2:10718815 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr2:10718840 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B123,B87,B88,C30,C35 |
Chr2:10718902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C16,C37 |
Chr2:10718905 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr2:10718956 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B51,B65,B89 |
Chr2:10718961 |
TC |
T |
1bp_deletion | frameshift_variant | 11 | A18,A6,B105,B40,B52,B68,B92,C1,C21,C50,C72 |
Chr2:10718965 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B56,C37,C6,C62,C79 |
Chr2:10718970 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,B41 |
Chr2:10718982 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B121,B76,C45,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797796.1PF00195
Chal_sti_synt_N 44-267 aa
PF08545
ACP_syn_III 201-267 aa
PF02797
Chal_sti_synt_C 277-427 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797796.1 |
Pfam | PF00195 |
Chal_sti_synt_N | Domain | 44 | 267 | 4.2e-107 | 357.4 | Chalcone and stilbene synthases, N-terminal domain |
XP_057797796.1 |
Pfam | PF08545 |
ACP_syn_III | Domain | 201 | 267 | 1.1e-05 | 26.0 | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III |
XP_057797796.1 |
Pfam | PF02797 |
Chal_sti_synt_C | Domain | 277 | 427 | 4.7e-62 | 209.2 | Chalcone and stilbene synthases, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。