Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000700`

染色体: Chr02 坐标: 11191957-11196658 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000700`
名称	SmilChr02G000700
描述	probable LRR receptor-like serine/threonine-protein kinase At3g47570
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	11191957 - 11196658 / `+`

ID 对照

NCBI Gene ID	`LOC131011173`
GeneID	`131011173`
locus_tag	`-`
NCBI Name	`LOC131011173`
原始查询	`SmilChr02G000700`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At3g47570
产物	probable LRR receptor-like serine/threonine-protein kinase At3g47570
Arabidopsis	`AT4G20140` (GSO1) Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760] identity=33.9; qcov=1.06; evalue=0; confidence=low
Rice	`Os02g0216000` (B1307A11.13) - identity=39.3; qcov=1.02; evalue=0; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131011173

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057794955.1`
2	Nucleus	细胞核	0.00000	`XP_057794955.1`
3	Chromosome	染色体	0.00000	`XP_057794955.1`
4	Centromere	着丝粒	0.00000	`XP_057794955.1`
5	Chromatin	染色质	0.00000	`XP_057794955.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:11192684`	`TG`	`T`	1bp_deletion	frameshift_variant	11	B114,B47,B63,B64,B8,B83,C17,C21,C4,C46,D1
`Chr2:11192702`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr2:11192767`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B13,B32,C32,C68,C87
`Chr2:11193329`	`A`	`AGG`	2bp_insertion	frameshift_variant	1	B6
`Chr2:11193329`	`A`	`AGG`	2bp_insertion	CDS_variant	1	B6
`Chr2:11193539`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B40,C78,D5
`Chr2:11193549`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B134,B41,B61
`Chr2:11193598`	`G`	`GC`	1bp_insertion	frameshift_variant	1	C50
`Chr2:11193598`	`G`	`GC`	1bp_insertion	CDS_variant	1	C50
`Chr2:11193729`	`C`	`CT`	1bp_insertion	frameshift_variant	3	A18,B10,B135
`Chr2:11193729`	`C`	`CT`	1bp_insertion	CDS_variant	3	A18,B10,B135
`Chr2:11194074`	`C`	`CAT`	2bp_insertion	frameshift_variant	1	B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794955.1

1164 aa

582

1164

LRRNT_2

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 32-72 aa PF13855 LRR_8 124-184 aa PF00560 LRR_1 149-171 aa PF00560 LRR_1 173-195 aa PF13855 LRR_8 246-305 aa PF00560 LRR_1 270-292 aa PF00560 LRR_1 294-316 aa PF00560 LRR_1 441-462 aa PF00560 LRR_1 464-486 aa PF00560 LRR_1 568-590 aa PF00560 LRR_1 617-637 aa PF00560 LRR_1 665-686 aa PF13855 LRR_8 712-771 aa PF00560 LRR_1 736-757 aa PF00069 Pkinase 879-1148 aa PF07714 PK_Tyr_Ser-Thr 882-1148 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794955.1`	Pfam	`PF08263`	LRRNT_2	Family	32	72	2.6e-10	41.1	Leucine rich repeat N-terminal domain
`XP_057794955.1`	Pfam	`PF13855`	LRR_8	Repeat	124	184	4e-47	158.5	Leucine rich repeat
`XP_057794955.1`	Pfam	`PF00560`	LRR_1	Repeat	149	171	4.2e-57	178.4	Leucine Rich Repeat
`XP_057794955.1`	Pfam	`PF00560`	LRR_1	Repeat	173	195	4.2e-57	178.4	Leucine Rich Repeat
`XP_057794955.1`	Pfam	`PF13855`	LRR_8	Repeat	246	305	4e-47	158.5	Leucine rich repeat
`XP_057794955.1`	Pfam	`PF00560`	LRR_1	Repeat	270	292	4.2e-57	178.4	Leucine Rich Repeat
`XP_057794955.1`	Pfam	`PF00560`	LRR_1	Repeat	294	316	4.2e-57	178.4	Leucine Rich Repeat
`XP_057794955.1`	Pfam	`PF00560`	LRR_1	Repeat	441	462	4.2e-57	178.4	Leucine Rich Repeat
`XP_057794955.1`	Pfam	`PF00560`	LRR_1	Repeat	464	486	4.2e-57	178.4	Leucine Rich Repeat
`XP_057794955.1`	Pfam	`PF00560`	LRR_1	Repeat	568	590	4.2e-57	178.4	Leucine Rich Repeat
`XP_057794955.1`	Pfam	`PF00560`	LRR_1	Repeat	617	637	4.2e-57	178.4	Leucine Rich Repeat
`XP_057794955.1`	Pfam	`PF00560`	LRR_1	Repeat	665	686	4.2e-57	178.4	Leucine Rich Repeat
`XP_057794955.1`	Pfam	`PF13855`	LRR_8	Repeat	712	771	4e-47	158.5	Leucine rich repeat
`XP_057794955.1`	Pfam	`PF00560`	LRR_1	Repeat	736	757	4.2e-57	178.4	Leucine Rich Repeat
`XP_057794955.1`	Pfam	`PF00069`	Pkinase	Domain	879	1148	1e-39	137.3	Protein kinase domain
`XP_057794955.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	882	1148	1.3e-36	126.9	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938972.1
ATAAATCGGCTAACACATCTAAAACATGATTTGGCCGTTTATATAATTGAGATCAAGAGTTGAGATTGAGTCTTATTTTATAGTATAAGATTGAATCTTATTTTAGCGCAACCCTATATATATATATATTTAAAAACATATATTTTTGTTTGTGAACGCACCCTAATAGGTAACGTTTTGCCGTATGATAGGTAACGTTTTTCCGTATGAAACAGACTCCAAATTTCTACACAACAATCCACCACACTTCGCATCTAGAC...

CDS

1 records

下载 CDS FASTA

LOC131011173
ATGAATAAAATATTTTATTTCATTTTTGCATCTACATTCCTCACCGTAACCTTTCAAACGCCTCCATGTCTAGCCATACCATCTATGAGCCTTGCCTCTGATGAAGCTGCGCTTCTTTCTCTCAAAGCCCACATCACCTCCGACCCTCCTCTCATGCTTTCAACAAACTGGACCAACTCAAGCTCCGTCTGCAGCTGGATTGGCGTCTCATGCAGCTTGCGCCACCAAAGAGTAGCTGCGTTGAATCTCTCCAACATGGC...

Protein

1 records

下载 Protein FASTA

XP_057794955.1
MNKIFYFIFASTFLTVTFQTPPCLAIPSMSLASDEAALLSLKAHITSDPPLMLSTNWTNSSSVCSWIGVSCSLRHQRVAALNLSNMALSGTIPPQLGHLSFLVSLDLTSNHFHGDLPQELSLLRRLKFISLRLNNFTGDIPPLFGRFPKLEYLSLRNNSFIGSIPKSLSNLTNLQFLDLTSNSLSGEIPKELGRLKSLRNLVVQFNRLSGAIPSAVFNISSLVSLALTGNELSGRLPTDMCPNLPLLDRILLSENQLSGP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器